| aa_occurrence_filter(utility::vector1< Real > const &pos_occurance, core::Real const pos_min_occurance, utility::vector1< bool > &keep_aas) | protocols::task_operations::SeqprofConsensusOperation | static |
| aa_probability_filter(Pose const &pose, utility::vector1< Real > const &pos_profile, core::Real const position_min_prob, core::Size const aa_idx, utility::vector1< bool > &keep_aas) const | protocols::task_operations::SeqprofConsensusOperation | |
| apply(Pose const &pose, PackerTask &task) const override | protocols::task_operations::RestrictConservedLowDdgOperation | virtual |
| chain_num() const | protocols::task_operations::SeqprofConsensusOperation | inline |
| chain_num(core::Size const d) | protocols::task_operations::SeqprofConsensusOperation | inline |
| clone() const override | protocols::task_operations::RestrictConservedLowDdgOperation | virtual |
| conservation_cutoff_ | protocols::task_operations::RestrictConservedLowDdgOperation | private |
| conservation_cutoff_aligned_segments() const | protocols::task_operations::SeqprofConsensusOperation | inline |
| conservation_cutoff_aligned_segments(core::Real const c) | protocols::task_operations::SeqprofConsensusOperation | inline |
| conservation_cutoff_protein_interface_design() const | protocols::task_operations::SeqprofConsensusOperation | inline |
| conservation_cutoff_protein_interface_design(core::Real const c) | protocols::task_operations::SeqprofConsensusOperation | inline |
| convert_scores_to_probabilities(bool const c) | protocols::task_operations::SeqprofConsensusOperation | inline |
| convert_scores_to_probabilities() const | protocols::task_operations::SeqprofConsensusOperation | inline |
| create_complex_type_generator(utility::tag::XMLSchemaDefinition &xsd) | protocols::task_operations::RestrictConservedLowDdgOperation | static |
| DataMap typedef | core::pack::task::operation::TaskOperation | |
| ddG_cutoff_ | protocols::task_operations::RestrictConservedLowDdgOperation | private |
| ddG_predictions_filename_ | protocols::task_operations::RestrictConservedLowDdgOperation | private |
| debug(bool const b) | protocols::task_operations::SeqprofConsensusOperation | inline |
| debug() const | protocols::task_operations::SeqprofConsensusOperation | inline |
| keep_native() const | protocols::task_operations::SeqprofConsensusOperation | inline |
| keep_native(bool const b) | protocols::task_operations::SeqprofConsensusOperation | inline |
| keyname() | protocols::task_operations::RestrictConservedLowDdgOperation | inlinestatic |
| PackerTask typedef | protocols::task_operations::SeqprofConsensusOperation | |
| Parent typedef | protocols::task_operations::RestrictConservedLowDdgOperation | |
| parent typedef | protocols::task_operations::SeqprofConsensusOperation | |
| parse_profile_from_pose(Pose const &pose) const | protocols::task_operations::SeqprofConsensusOperation | |
| parse_tag(TagCOP tag, DataMap &) override | protocols::task_operations::RestrictConservedLowDdgOperation | virtual |
| Pose typedef | protocols::task_operations::SeqprofConsensusOperation | |
| position_ala_ddG(core::Size seqpos) const | protocols::task_operations::RestrictConservedLowDdgOperation | |
| position_ddGs_ | protocols::task_operations::RestrictConservedLowDdgOperation | private |
| position_untouchable(core::Size seqpos, core::chemical::AA seqprof_wt) const | protocols::task_operations::RestrictConservedLowDdgOperation | |
| protein_interface_design() const | protocols::task_operations::SeqprofConsensusOperation | |
| protein_interface_design(ProteinInterfaceDesignOperationOP pido) | protocols::task_operations::SeqprofConsensusOperation | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | core::pack::task::operation::TaskOperation | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::task_operations::RestrictConservedLowDdgOperation | static |
| Real typedef | protocols::task_operations::SeqprofConsensusOperation | |
| restrict_to_aligned_segments() const | protocols::task_operations::SeqprofConsensusOperation | |
| restrict_to_aligned_segments(RestrictToAlignedSegmentsOperationOP rtas) | protocols::task_operations::SeqprofConsensusOperation | |
| RestrictConservedLowDdgOperation() | protocols::task_operations::RestrictConservedLowDdgOperation | |
| seqprof() const | protocols::task_operations::SeqprofConsensusOperation | |
| seqprof_wt_aa(core::Size seqpos) const | protocols::task_operations::RestrictConservedLowDdgOperation | |
| SeqprofConsensusOperation() | protocols::task_operations::SeqprofConsensusOperation | |
| set_ignore_pose_profile_length_mismatch(bool const setting) | protocols::task_operations::SeqprofConsensusOperation | inline |
| set_seqprof(core::sequence::SequenceProfileOP seqprof, bool reweight=false) | protocols::task_operations::SeqprofConsensusOperation | |
| String typedef | protocols::task_operations::SeqprofConsensusOperation | |
| TagCOP typedef | protocols::task_operations::SeqprofConsensusOperation | |
| TaskOperation typedef | protocols::task_operations::SeqprofConsensusOperation | |
| TaskOperationOP typedef | protocols::task_operations::SeqprofConsensusOperation | |
| use_occurrence_data() const | protocols::task_operations::SeqprofConsensusOperation | inline |
| use_occurrence_data(bool const b) | protocols::task_operations::SeqprofConsensusOperation | inline |
| verbose() const | protocols::task_operations::RestrictConservedLowDdgOperation | inline |
| verbose_ | protocols::task_operations::RestrictConservedLowDdgOperation | private |
| ~RestrictConservedLowDdgOperation() override | protocols::task_operations::RestrictConservedLowDdgOperation | |
| ~SeqprofConsensusOperation() override | protocols::task_operations::SeqprofConsensusOperation | |
| ~TaskOperation() override | core::pack::task::operation::TaskOperation | |
1.8.7