core::pack::annealer::FASTERAnnealer Member List

This is the complete list of members for core::pack::annealer::FASTERAnnealer, including all inherited members.

bestenergy()	core::pack::annealer::SimAnnealerBase	protected
bestrotamer_at_seqpos()	core::pack::annealer::SimAnnealerBase	protected
bestrotamer_at_seqpos() const	core::pack::annealer::SimAnnealerBase	protected
calc_freq_temp	core::pack::annealer::SimAnnealerBase	protectedstatic
calc_rot_freq() const	core::pack::annealer::SimAnnealerBase	protected
ciBR()	core::pack::annealer::FASTERAnnealer	private
ciBR_only_	core::pack::annealer::FASTERAnnealer	private
clear()	core::pack::annealer::SimAnnealerBase	protected
curr_in_recent_history_	core::pack::annealer::FASTERAnnealer	private
current_rot_index()	core::pack::annealer::SimAnnealerBase	protected
current_rot_index() const	core::pack::annealer::SimAnnealerBase	protected
dBR()	core::pack::annealer::FASTERAnnealer	private
FASTERAnnealer(ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, interaction_graph::FASTERInteractionGraphOP ig, FixbbRotamerSetsCOP rotamer_sets, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)	core::pack::annealer::FASTERAnnealer
finalize_output()	core::pack::annealer::FASTERAnnealer	private
FixbbRotamerSetsCOP typedef	core::pack::annealer::FASTERAnnealer
get_annealer_observer()	core::pack::annealer::SimAnnealerBase	inline
get_annealer_observer() const	core::pack::annealer::SimAnnealerBase	inline
get_calc_rot_freq() const	core::pack::annealer::SimAnnealerBase
get_hightemp() const	core::pack::annealer::SimAnnealerBase	inlineprotected
get_inneriterations() const	core::pack::annealer::SimAnnealerBase
get_lowtemp() const	core::pack::annealer::SimAnnealerBase	inlineprotected
get_outeriterations() const	core::pack::annealer::SimAnnealerBase
get_start_with_current() const	core::pack::annealer::SimAnnealerBase
get_temperature() const	core::pack::annealer::SimAnnealerBase
hash_recent_history(int history_index)	core::pack::annealer::FASTERAnnealer	private
hash_size_	core::pack::annealer::FASTERAnnealer	privatestatic
hightemp	core::pack::annealer::SimAnnealerBase	protectedstatic
iBR()	core::pack::annealer::FASTERAnnealer	private
ig_	core::pack::annealer::FASTERAnnealer	private
lowtemp	core::pack::annealer::SimAnnealerBase	protectedstatic
maxouteriterations	core::pack::annealer::SimAnnealerBase	protectedstatic
netstate_duplicated_	core::pack::annealer::FASTERAnnealer	private
note_current_network_state(ObjexxFCL::FArray1_int const &netstate)	core::pack::annealer::FASTERAnnealer	private
num_nodes_	core::pack::annealer::FASTERAnnealer	private
num_rots_to_pack() const	core::pack::annealer::SimAnnealerBase	inlineprotected
num_rots_to_pack(Size setting)	core::pack::annealer::SimAnnealerBase	protected
num_sa_trajectories_	core::pack::annealer::FASTERAnnealer	private
parent typedef	core::pack::annealer::FASTERAnnealer
pass_metropolis(core::PackerEnergy delta_energy) const	core::pack::annealer::SimAnnealerBase
pass_metropolis(core::PackerEnergy previous_energy, core::PackerEnergy delta_energy) const	core::pack::annealer::SimAnnealerBase
pick_a_rotamer(int cycle)	core::pack::annealer::RotamerAssigningAnnealer
pick_a_rotamer_for_node(int node) const	core::pack::annealer::RotamerAssigningAnnealer
pick_a_rotamer_for_sBR()	core::pack::annealer::FASTERAnnealer	private
pick_rotamer_for_node(int node)	core::pack::annealer::FASTERAnnealer	private
progress_through_sBR_	core::pack::annealer::FASTERAnnealer	private
quench() const	core::pack::annealer::SimAnnealerBase
recent_history_hash_count_	core::pack::annealer::FASTERAnnealer	private
recent_history_hash_values_	core::pack::annealer::FASTERAnnealer	private
recent_history_head_	core::pack::annealer::FASTERAnnealer	private
recent_history_size_	core::pack::annealer::FASTERAnnealer	privatestatic
recent_network_state_history_	core::pack::annealer::FASTERAnnealer	private
reset_recent_network_state_history()	core::pack::annealer::FASTERAnnealer	private
rot_freq()	core::pack::annealer::SimAnnealerBase	protected
rot_freq() const	core::pack::annealer::SimAnnealerBase	protected
rot_to_pack() const	core::pack::annealer::RotamerAssigningAnnealer	protected
rotamer_sets() const	core::pack::annealer::RotamerAssigningAnnealer	protected
rotamer_sets_	core::pack::annealer::FASTERAnnealer	private
RotamerAssigningAnnealer(int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)	core::pack::annealer::RotamerAssigningAnnealer
RotamerAssigningAnnealer(utility::vector0< int > &rot_to_pack, int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)	core::pack::annealer::RotamerAssigningAnnealer
RotamerSetsBaseCOP typedef	core::pack::annealer::SimAnnealerBase
run() override	core::pack::annealer::FASTERAnnealer	virtual
run_quench_cycles()	core::pack::annealer::FASTERAnnealer	private
sa_inner_iterations_length_scale_	core::pack::annealer::FASTERAnnealer	private
sBR()	core::pack::annealer::FASTERAnnealer	private
sBR_limit_	core::pack::annealer::FASTERAnnealer	private
sBR_rotamers_	core::pack::annealer::FASTERAnnealer	private
scale_inneriterations(core::PackerEnergy const si)	core::pack::annealer::SimAnnealerBase	inline
scale_outeriterations(core::PackerEnergy const so)	core::pack::annealer::SimAnnealerBase	inline
set_annealer_observer(AnnealerObserverOP obs)	core::pack::annealer::SimAnnealerBase	inline
set_assign_state_to_all_nodes_immediately(bool setting)	core::pack::annealer::RotamerAssigningAnnealer
set_ciBR_only(bool setting)	core::pack::annealer::FASTERAnnealer
set_disallow_quench(bool const &setting)	core::pack::annealer::SimAnnealerBase
set_hightemp(core::PackerEnergy)	core::pack::annealer::SimAnnealerBase
set_lowtemp(core::PackerEnergy)	core::pack::annealer::SimAnnealerBase
set_not_to_quench()	core::pack::annealer::SimAnnealerBase
set_num_sa_trajectories(int setting)	core::pack::annealer::FASTERAnnealer
set_sa_length_scale(Real setting)	core::pack::annealer::FASTERAnnealer
set_temperature(core::PackerEnergy new_temperature)	core::pack::annealer::SimAnnealerBase
set_to_quench()	core::pack::annealer::SimAnnealerBase
setup_iterations()	core::pack::annealer::SimAnnealerBase
setup_iterations(const int &num_of_state_changes)	core::pack::annealer::SimAnnealerBase
setup_temperature(const int &nn)	core::pack::annealer::SimAnnealerBase
setup_temperature(const ObjexxFCL::FArray1D< core::PackerEnergy > &loopenergy, int nn)	core::pack::annealer::SimAnnealerBase
shuffle_sBR_rotamers()	core::pack::annealer::FASTERAnnealer	private
SimAnnealerBase(int num_rots_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)	core::pack::annealer::SimAnnealerBase
start_with_current() const	core::pack::annealer::SimAnnealerBase	protected
stuck_in_network_state_loop()	core::pack::annealer::FASTERAnnealer	private
trySeveral_ciBRs()	core::pack::annealer::FASTERAnnealer	private
~FASTERAnnealer() override	core::pack::annealer::FASTERAnnealer
~RotamerAssigningAnnealer() override	core::pack::annealer::RotamerAssigningAnnealer
~SimAnnealerBase() override	core::pack::annealer::SimAnnealerBase