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core::pack::rotamer_set::RotamerSet_ Member List

This is the complete list of members for core::pack::rotamer_set::RotamerSet_, including all inherited members.

add_rotamer(conformation::Residue const &rotamer) overridecore::pack::rotamer_set::RotamerSet_virtual
add_rotamer_into_existing_group(conformation::Residue const &rotamer) overridecore::pack::rotamer_set::RotamerSet_virtual
BasicDataCache typedefcore::conformation::RotamerSetBase
BasicDataCacheOP typedefcore::conformation::RotamerSetBase
begin() const overridecore::pack::rotamer_set::RotamerSet_inlinevirtual
build_dependent_rotamers(RotamerSets const &rotamer_sets, pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph) overridecore::pack::rotamer_set::RotamerSet_virtual
build_dependent_rotamers_for_concrete(RotamerSets const &rotamer_sets, pose::Pose const &pose, scoring::ScoreFunction const &, task::PackerTask const &task, conformation::Residue const &existing_residue, chemical::ResidueTypeCOP concrete_residue, utility::graph::GraphCOP packer_neighbor_graph)core::pack::rotamer_set::RotamerSet_protected
build_filtered_tp3_water_rotamers(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, utility::graph::GraphCOP packer_neighbor_graph)core::pack::rotamer_set::RotamerSet_private
build_optimize_H_rotamers(pose::Pose const &pose, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, utility::graph::GraphCOP packer_neighbor_graph, scoring::ScoreFunction const &scorefxn)core::pack::rotamer_set::RotamerSet_protected
build_rotamers(pose::Pose const &the_pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, bool use_neighbor_context=true) overridecore::pack::rotamer_set::RotamerSet_virtual
build_rotamers_for_concrete(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, utility::graph::GraphCOP packer_neighbor_graph, bool use_neighbor_context=true)core::pack::rotamer_set::RotamerSet_protected
build_rotamers_for_concrete_virt(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, utility::graph::GraphCOP packer_neighbor_graph, bool use_neighbor_context=true)core::pack::rotamer_set::RotamerSet_protectedvirtual
build_tp3_water_rotamers(pose::Pose const &pose, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, utility::graph::GraphCOP packer_neighbor_graph, scoring::ScoreFunction const &scorefxn)core::pack::rotamer_set::RotamerSet_private
build_virtualizable_rotatable_water_rotamers(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, utility::graph::GraphCOP packer_neighbor_graph)core::pack::rotamer_set::RotamerSet_private
bump_check(ResidueCOP rotamer, scoring::ScoreFunction const &sf, pose::Pose const &pose, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph) const core::pack::rotamer_set::RotamerSet_virtual
bump_selector_core::pack::rotamer_set::RotamerSet_private
cached_tries_core::pack::rotamer_set::RotamerSet_private
ChiSetOP typedefcore::pack::rotamer_set::RotamerSet_
compute_one_and_two_body_energies(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< core::PackerEnergy > &one_body_energies, utility::vector1< utility::vector1< core::PackerEnergy > > &two_body_energies, utility::vector1< core::Size > &packable_neighbors) const overridecore::pack::rotamer_set::RotamerSet_virtual
compute_one_body_energies(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< core::PackerEnergy > &energies, bool const no_update=false) const overridecore::pack::rotamer_set::RotamerSet_virtual
compute_one_body_energy_maps(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< scoring::EnergyMap > &energies) const overridecore::pack::rotamer_set::RotamerSet_virtual
current_rotamer_copy_core::pack::rotamer_set::RotamerSet_private
data()core::conformation::RotamerSetBase
data() const core::conformation::RotamerSetBase
drop_rotamer(Size rot_id) overridecore::pack::rotamer_set::RotamerSet_virtual
drop_rotamers(utility::vector1< bool > const &rotamers_to_delete) overridecore::pack::rotamer_set::RotamerSet_virtual
drop_rotamers_by_index(utility::vector1< Size > const &rotamer_indices_to_delete) overridecore::pack::rotamer_set::RotamerSet_virtual
end() const overridecore::pack::rotamer_set::RotamerSet_inlinevirtual
filter_water_rotamers(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< conformation::ResidueOP > const &new_rotamers, utility::vector1< conformation::ResidueOP > &filtered_rotamers)core::pack::rotamer_set::RotamerSet_protected
get_n_residue_groups() const overridecore::pack::rotamer_set::RotamerSet_virtual
get_n_residue_types() const overridecore::pack::rotamer_set::RotamerSet_virtual
get_n_rotamers_for_residue_group(Size which_resgroup) const overridecore::pack::rotamer_set::RotamerSet_virtual
get_n_rotamers_for_residue_type(Size which_resgroup) const overridecore::pack::rotamer_set::RotamerSet_virtual
get_residue_group_begin(Size which_resgroup) const overridecore::pack::rotamer_set::RotamerSet_virtual
get_residue_group_index_for_rotamer(Size which_rotamer) const overridecore::pack::rotamer_set::RotamerSet_virtual
get_residue_type_begin(Size which_restype) const overridecore::pack::rotamer_set::RotamerSet_virtual
get_residue_type_index_for_rotamer(Size which_rotamer) const overridecore::pack::rotamer_set::RotamerSet_virtual
get_trie(Size method_enum_id) const overridecore::pack::rotamer_set::RotamerSet_virtual
id_for_current_rotamer() const overridecore::pack::rotamer_set::RotamerSet_virtual
id_for_current_rotamer_core::pack::rotamer_set::RotamerSet_mutableprivate
initialize_pose_for_rotset_creation(pose::Pose &) const overridecore::pack::rotamer_set::RotamerSet_inlinevirtual
n_residue_groups_core::pack::rotamer_set::RotamerSet_mutableprivate
n_residue_types_core::pack::rotamer_set::RotamerSet_mutableprivate
n_rotamers_for_resgroup_core::pack::rotamer_set::RotamerSet_mutableprivate
n_rotamers_for_restype_core::pack::rotamer_set::RotamerSet_mutableprivate
new_residue_group()core::pack::rotamer_set::RotamerSet_private
new_residue_type()core::pack::rotamer_set::RotamerSet_private
nonconst_rotamer(Size rot_id) overridecore::pack::rotamer_set::RotamerSet_virtual
num_rotamers() const overridecore::pack::rotamer_set::RotamerSet_virtual
prepare_for_new_residue_type(core::chemical::ResidueType const &restype)core::pack::rotamer_set::RotamerSet_private
push_back_rotamer(conformation::ResidueOP)core::pack::rotamer_set::RotamerSet_private
push_back_rotamers(Rotamers const &)core::pack::rotamer_set::RotamerSet_private
resid() const overridecore::pack::rotamer_set::RotamerSetinlinevirtual
residue_group_for_rotamers_core::pack::rotamer_set::RotamerSet_mutableprivate
residue_group_rotamers_begin_core::pack::rotamer_set::RotamerSet_mutableprivate
residue_type_for_rotamers_core::pack::rotamer_set::RotamerSet_mutableprivate
residue_type_rotamers_begin_core::pack::rotamer_set::RotamerSet_mutableprivate
ResidueCOP typedefcore::pack::rotamer_set::RotamerSet_
ResidueOP typedefcore::pack::rotamer_set::RotamerSet_
rotamer(Size rot_id) const overridecore::pack::rotamer_set::RotamerSet_virtual
rotamer_data_cache(Size rot_id) const overridecore::pack::rotamer_set::RotamerSet_virtual
rotamer_offsets_require_update_core::pack::rotamer_set::RotamerSet_mutableprivate
rotamer_ref(Size rot_id) const overridecore::pack::rotamer_set::RotamerSet_virtual
rotamers_core::pack::rotamer_set::RotamerSet_mutableprivate
rotamers_waiting_for_sort_core::pack::rotamer_set::RotamerSet_mutableprivate
RotamerSet()core::pack::rotamer_set::RotamerSet
RotamerSet_()core::pack::rotamer_set::RotamerSet_
RotamerSet_(RotamerSet_ const &)core::pack::rotamer_set::RotamerSet_private
RotamerSetBase()core::conformation::RotamerSetBase
RotamerTrieBaseOP typedefcore::pack::rotamer_set::RotamerSet_
set_extra_samples(task::PackerTask const &task, int num_10A_neighbors, int chi, chemical::ResidueTypeCOP concrete_residue, utility::vector1< Real > &extra_chi_steps) const core::pack::rotamer_set::RotamerSet_
set_resid(Size resid)core::pack::rotamer_set::RotamerSet
show(std::ostream &out) const overridecore::pack::rotamer_set::RotamerSet_virtual
store_trie(Size method_enum_id, conformation::AbstractRotamerTrieOP trie) overridecore::pack::rotamer_set::RotamerSet_virtual
update_rotamer_offsets() const overridecore::pack::rotamer_set::RotamerSet_virtual
~RotamerSet() overridecore::pack::rotamer_set::RotamerSet
~RotamerSet_() overridecore::pack::rotamer_set::RotamerSet_
~RotamerSetBase() overridecore::conformation::RotamerSetBase
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