protocols::frag_picker::scores::CachingScoringMethod Class Reference

#include <CachingScoringMethod.hh>

Inheritance diagram for protocols::frag_picker::scores::CachingScoringMethod:

Public Member Functions
	CachingScoringMethod (core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)
virtual void	do_caching (VallChunkOP)=0
virtual void	clean_up ()=0
virtual bool	cached_score (FragmentCandidateOP, FragmentScoreMapOP)
bool	score (FragmentCandidateOP, FragmentScoreMapOP) override
Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
	FragmentScoringMethod (core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)
std::string &	get_score_name ()
	Returns a name of this scoring method. More...
core::Size	get_id ()
	Returns an integer index assigned to this scoring method by a scoring manager. More...
void	set_id (core::Size id)
	Sets a new integer index for this scoring method. More...
core::Size	get_priority ()
	Returns a priority of this scoring method. More...
core::Real	get_min_allowed_score ()
	Returns the lowest acceptable score value for this scoring method. More...
bool	get_use_lowest ()
	Returns the boolean choice on using the above lowest acceptable score value. More...
void	set_min_allowed_score (core::Real lowest_acceptable_value)
	Sets a new value of the lowest acceptable score. More...

Additional Inherited Members
Protected Attributes inherited from protocols::frag_picker::scores::FragmentScoringMethod
core::Size	id_
core::Size	priority_
std::string	name_
core::Real	lowest_acceptable_value_
bool	use_lowest_

Constructor & Destructor Documentation

protocols::frag_picker::scores::CachingScoringMethod::CachingScoringMethod ( core::Size  priority, core::Real  lowest_acceptable_value, bool  use_lowest, std::string  name  )

inline

Member Function Documentation

virtual bool protocols::frag_picker::scores::CachingScoringMethod::cached_score ( FragmentCandidateOP  , FragmentScoreMapOP    )

inlinevirtual

Reimplemented in protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::ABEGO_SS_Score, protocols::frag_picker::scores::TorsionBinSimilarity, protocols::frag_picker::scores::LAMBEGO_Similarity, protocols::frag_picker::scores::ProfileScore, protocols::frag_picker::scores::SolventAccessibility, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::ProfileScoreDistWeight, protocols::frag_picker::scores::DihedralConstraintsScore, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::TalosSSSimilarity, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::InterbondAngleScore, protocols::frag_picker::scores::AmbigCSScore, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::AtomPairConstraintsScore, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::ProfileScoreSubMatrix, and protocols::frag_picker::scores::RDCScore.

virtual void protocols::frag_picker::scores::CachingScoringMethod::clean_up ( )

pure virtual

Implemented in protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::ABEGO_SS_Score, protocols::frag_picker::scores::TorsionBinSimilarity, protocols::frag_picker::scores::LAMBEGO_Similarity, protocols::frag_picker::scores::ProfileScore, protocols::frag_picker::scores::SolventAccessibility, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::AtomBasedConstraintsScore, protocols::frag_picker::scores::TalosSSSimilarity, protocols::frag_picker::scores::ProfileScoreDistWeight, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::AmbigCSScore, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::ScoreEValuator, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::ProfileScoreSubMatrix, and protocols::frag_picker::scores::RDCScore.

Referenced by protocols::frag_picker::scores::FragmentScoreManager::clean_up().

virtual void protocols::frag_picker::scores::CachingScoringMethod::do_caching ( VallChunkOP  )

pure virtual

Implemented in protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::ABEGO_SS_Score, protocols::frag_picker::scores::TorsionBinSimilarity, protocols::frag_picker::scores::ProfileScore, protocols::frag_picker::scores::SolventAccessibility, protocols::frag_picker::scores::LAMBEGO_Similarity, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::ProfileScoreDistWeight, protocols::frag_picker::scores::AtomBasedConstraintsScore, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::TalosSSSimilarity, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::AmbigCSScore, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::ScoreEValuator, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::ProfileScoreSubMatrix, and protocols::frag_picker::scores::RDCScore.

Referenced by protocols::frag_picker::scores::FragmentScoreManager::do_caching().

bool protocols::frag_picker::scores::CachingScoringMethod::score ( FragmentCandidateOP  , FragmentScoreMapOP    )

inlineoverridevirtual

Implements protocols::frag_picker::scores::FragmentScoringMethod.

Reimplemented in protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::SolventAccessibility, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::TalosSSSimilarity, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::ScoreEValuator, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::ProfileScoreSubMatrix, and protocols::frag_picker::scores::RDCScore.

Referenced by protocols::frag_picker::scores::ProfileScoreDistWeight::do_caching().

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The documentation for this class was generated from the following file:

• src/protocols/frag_picker/scores/CachingScoringMethod.hh