| actual_phosphate_move_list_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| apply(core::pose::Pose &pose) override | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inlinevirtual |
| check_moved(utility::vector1< PhosphateMove > phosphate_move_list, core::pose::Pose const &pose) const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| check_other_partition_for_contact(core::pose::Pose const &pose, utility::vector1< core::Size > const &other_partition_res, core::Vector const &takeoff_xyz) const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inlinevirtual |
| clone_sampler() const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| copy_phosphates(core::pose::Pose &mod_pose) const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| create() | protocols::moves::Mover | virtual |
| do_prepack(core::pose::Pose &pose, utility::vector1< core::Size > const &moving_res_list) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| find_phosphate_contacts_other_partition(utility::vector1< core::Size > const &partition_res1, utility::vector1< core::Size > const &partition_res2, core::pose::Pose const &pose, utility::vector1< PhosphateMove > const &phosphate_move_list, utility::vector1< PhosphateMove > &actual_phosphate_move_list) const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| find_uninstantiated_phosphates(core::pose::Pose const &pose, utility::vector1< PhosphateMove > const &phosphate_move_list, utility::vector1< PhosphateMove > &actual_phosphate_move_list) const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| five_prime_phosphate_res_input_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| force_phosphate_instantiation() const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| force_phosphate_instantiation_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_scorefxn() | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_by_prepack(core::pose::Pose &pose, core::Size const moving_res) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| initialize_by_prepack(core::pose::Pose &pose, utility::vector1< core::Size > const &moving_res_list) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| initialize_parameters() | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| initialize_phosphate_move_list(core::pose::Pose &pose) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| instantiated_some_phosphate() const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| instantiated_some_phosphate_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| moving_partition_res() | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| moving_partition_res_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| MultiPhosphateSampler(core::pose::Pose const &reference_pose) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| MultiPhosphateSampler(core::pose::Pose &pose_to_prepack, core::Size const moving_res) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| name() | protocols::moves::Mover | inlinestatic |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| phosphate_move_list() const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| phosphate_move_list_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| phosphate_sample_pose_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| phosphate_takeoff_donor_distance_cutoff2_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| Pose typedef | protocols::moves::Mover | |
| pose() | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| pose_with_original_phosphates_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| PoseCOP typedef | protocols::moves::Mover | |
| prepacked_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset(core::pose::Pose const &pose) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| reset_status() | protocols::moves::Mover | |
| reset_to_original_pose() | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| sample_phosphates() | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| sample_phosphates(core::pose::PoseOP &viewer_pose_op) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| scorefxn_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| screen_all() const | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| screen_all_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_five_prime_phosphate_res(utility::vector1< core::Size > const &setting) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| set_force_phosphate_instantiation(bool const &setting) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_moving_partition_res(utility::vector1< core::Size > const &setting) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_phosphate_move_list(utility::vector1< PhosphateMove > const &setting) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| set_scorefxn(core::scoring::ScoreFunctionCOP scorefxn) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
| set_screen_all(bool const &setting) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| set_three_prime_phosphate_res(utility::vector1< core::Size > const &setting) | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | inline |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| three_prime_phosphate_res_input_ | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~MultiPhosphateSampler() override | protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler | |
1.8.7