SpanTopologyMatchPoseFilter.cc File Reference

return the matching (%) between span file determined topology and of the actual pose More...

#include <ObjexxFCL/FArray1D.fwd.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/format.hh>
#include <basic/MetricValue.hh>
#include <basic/Tracer.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreTypeManager.hh>
#include <core/types.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <map>
#include <numeric/random/random.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/scoring/Interface.hh>
#include <protocols/simple_filters/SpanTopologyMatchPoseFilter.hh>
#include <protocols/simple_filters/SpanTopologyMatchPoseFilterCreator.hh>
#include <string>
#include <utility/exit.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <iostream>
#include <fstream>
#include <core/conformation/membrane/MembraneInfo.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <core/conformation/membrane/Span.hh>
#include <protocols/membrane/util.hh>
#include <core/conformation/membrane/Exceptions.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/filters/filter_schemas.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::simple_filters

Functions
static basic::Tracer	protocols::simple_filters::TR ("protocols.simple_filters.SpanTopologyMatchPoseFilter")

Detailed Description

return the matching (%) between span file determined topology and of the actual pose

this filter checks whether the topology descriobed by the use (i.e in the span file on tags) is actually kept in the pose. it dose this by creating a topology string, made of i (in), o (out) and M (membrnae) corresponding to each amino acid in the pose. such a topology string is made both for the user specified topology, and the actual pose in the current conformation. the percentage of identity between the two strings is reported.

Author

Jonathan Weinstein (jonat.nosp@m.han..nosp@m.weins.nosp@m.tein.nosp@m.@weiz.nosp@m.mann.nosp@m..ac.i.nosp@m.l)