| antibody_build_ | protocols::antibody_legacy::CDRH3Modeler | private |
| antibody_in_ | protocols::antibody_legacy::CDRH3Modeler | private |
| antibody_modeling_insert_ter() | protocols::antibody_legacy::CDRH3Modeler | |
| antibody_refine_ | protocols::antibody_legacy::CDRH3Modeler | private |
| apply(core::pose::Pose &pose_in) override | protocols::antibody_legacy::CDRH3Modeler | virtual |
| apply_centroid_mode_ | protocols::antibody_legacy::CDRH3Modeler | private |
| apply_fullatom_mode_ | protocols::antibody_legacy::CDRH3Modeler | private |
| base_ | protocols::antibody_legacy::CDRH3Modeler | private |
| benchmark_ | protocols::antibody_legacy::CDRH3Modeler | private |
| build_centroid_loop() | protocols::antibody_legacy::CDRH3Modeler | |
| build_fullatom_loop() | protocols::antibody_legacy::CDRH3Modeler | |
| c_ter_stem_ | protocols::antibody_legacy::CDRH3Modeler | private |
| CDR_H3_filter(const core::pose::Pose &pose_in, core::Size const loop_begin, core::Size const size, char const light_chain= 'L') | protocols::antibody_legacy::CDRH3Modeler | |
| cdr_h3_frags_ | protocols::antibody_legacy::CDRH3Modeler | private |
| CDRH3Modeler(utility::vector1< core::fragment::FragSetOP > cdr_h3_frags) | protocols::antibody_legacy::CDRH3Modeler | |
| cen_cst_ | protocols::antibody_legacy::CDRH3Modeler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| current_loop_is_H3_ | protocols::antibody_legacy::CDRH3Modeler | private |
| cutoff_3_ | protocols::antibody_legacy::CDRH3Modeler | private |
| cutoff_9_ | protocols::antibody_legacy::CDRH3Modeler | private |
| cutpoint_separation(core::pose::Pose &pose_in, core::Size cutpoint) | protocols::antibody_legacy::CDRH3Modeler | |
| cutpoints_separation() | protocols::antibody_legacy::CDRH3Modeler | |
| decoy_loop_cutpoint_ | protocols::antibody_legacy::CDRH3Modeler | private |
| dle_flag_ | protocols::antibody_legacy::CDRH3Modeler | private |
| do_h3_modeling_ | protocols::antibody_legacy::CDRH3Modeler | private |
| docking_local_refine_ | protocols::antibody_legacy::CDRH3Modeler | private |
| enable_benchmark_mode(bool setting) | protocols::antibody_legacy::CDRH3Modeler | inline |
| fa_scorefxn_ | protocols::antibody_legacy::CDRH3Modeler | private |
| flank_relax_ | protocols::antibody_legacy::CDRH3Modeler | private |
| freeze_h3_ | protocols::antibody_legacy::CDRH3Modeler | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::antibody_legacy::CDRH3Modeler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| H3_base_library | protocols::antibody_legacy::CDRH3Modeler | |
| H3_filter_ | protocols::antibody_legacy::CDRH3Modeler | private |
| h3_flank_ | protocols::antibody_legacy::CDRH3Modeler | private |
| h3_random_cut_ | protocols::antibody_legacy::CDRH3Modeler | private |
| high_cst_ | protocols::antibody_legacy::CDRH3Modeler | private |
| highres_scorefxn_ | protocols::antibody_legacy::CDRH3Modeler | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init_task_factory_ | protocols::antibody_legacy::CDRH3Modeler | private |
| is_camelid_ | protocols::antibody_legacy::CDRH3Modeler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| loop_centroid_relax(core::pose::Pose &pose_in, core::Size const loop_begin, core::Size const loop_end) | protocols::antibody_legacy::CDRH3Modeler | |
| loop_fa_relax(core::pose::Pose &pose_in, core::Size const loop_begin, core::Size const loop_end) | protocols::antibody_legacy::CDRH3Modeler | |
| loops_flag_ | protocols::antibody_legacy::CDRH3Modeler | private |
| lowres_scorefxn_ | protocols::antibody_legacy::CDRH3Modeler | private |
| min_base_relax_ | protocols::antibody_legacy::CDRH3Modeler | private |
| model_h3(bool setting) | protocols::antibody_legacy::CDRH3Modeler | inline |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| refine_input_loop_ | protocols::antibody_legacy::CDRH3Modeler | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| scored_frag_close(core::pose::Pose &pose_in, loops::Loop const trimmed_cdr_h3) | protocols::antibody_legacy::CDRH3Modeler | |
| set_camelid(bool setting) | protocols::antibody_legacy::CDRH3Modeler | inline |
| set_centroid_loop_building(bool setting) | protocols::antibody_legacy::CDRH3Modeler | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_default() | protocols::antibody_legacy::CDRH3Modeler | |
| set_fullatom_loop_building(bool setting) | protocols::antibody_legacy::CDRH3Modeler | inline |
| set_highres_score_func(core::scoring::ScoreFunctionOP highres_scorefxn) | protocols::antibody_legacy::CDRH3Modeler | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_lowres_score_func(core::scoring::ScoreFunctionOP lowres_scorefxn) | protocols::antibody_legacy::CDRH3Modeler | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| setup_packer_task(core::pose::Pose &pose_in) | protocols::antibody_legacy::CDRH3Modeler | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| snug_fit_ | protocols::antibody_legacy::CDRH3Modeler | private |
| start_pose_ | protocols::antibody_legacy::CDRH3Modeler | private |
| store_H3_cter_fragment(utility::vector1< core::fragment::FragData > &base_library_in) | protocols::antibody_legacy::CDRH3Modeler | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| template_pose_ | protocols::antibody_legacy::CDRH3Modeler | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| tf_ | protocols::antibody_legacy::CDRH3Modeler | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~CDRH3Modeler() override | protocols::antibody_legacy::CDRH3Modeler | |
1.8.7