protocols::flexpep_docking::FlexPepDockingProtocol Member List

This is the complete list of members for protocols::flexpep_docking::FlexPepDockingProtocol, including all inherited members.

addLowResStatistics(core::pose::Pose const &start_pose, core::pose::Pose &pose_after_lowres) const	protocols::flexpep_docking::FlexPepDockingProtocol	private
allprotein_tf_	protocols::flexpep_docking::FlexPepDockingProtocol	private
apply(core::pose::Pose &pose) override	protocols::flexpep_docking::FlexPepDockingProtocol	virtual
backrub_move(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
calcMetrics(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
check_filters(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::flexpep_docking::FlexPepDockingProtocol	virtual
create()	protocols::moves::Mover	virtual
extend_peptide(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
flags_	protocols::flexpep_docking::FlexPepDockingProtocol	private
FlexPepDockingProtocol(core::Size const rb_jump_in=1)	protocols::flexpep_docking::FlexPepDockingProtocol
FlexPepDockingProtocol(core::Size const rb_jump_in, bool const fullatom, bool const view=false)	protocols::flexpep_docking::FlexPepDockingProtocol
flip_in_pcs(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
fpdock_metrics_	protocols::flexpep_docking::FlexPepDockingProtocol	private
fresh_instance() const	protocols::moves::Mover	virtual
fullatom_	protocols::flexpep_docking::FlexPepDockingProtocol	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::flexpep_docking::FlexPepDockingProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
hires_fpdock_protocol(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
if_metrics_	protocols::flexpep_docking::FlexPepDockingProtocol	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
interface_packer_	protocols::flexpep_docking::FlexPepDockingProtocol	private
interface_tf_	protocols::flexpep_docking::FlexPepDockingProtocol	private
is_fail_	protocols::flexpep_docking::FlexPepDockingProtocol	private
is_trimmed_loops_	protocols::flexpep_docking::FlexPepDockingProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loop_relax_mover_	protocols::flexpep_docking::FlexPepDockingProtocol	private
markInterfaceBySideChainContacts(ObjexxFCL::FArray1D_bool &native_interface_residues, core::Size distance) const	protocols::flexpep_docking::FlexPepDockingProtocol	private
markNativeInterface(ObjexxFCL::FArray1D_bool &superpos_partner, ObjexxFCL::FArray1D_bool &native_interface_residues, bool mark_receptor_interface) const	protocols::flexpep_docking::FlexPepDockingProtocol	private
mc_	protocols::flexpep_docking::FlexPepDockingProtocol	private
minimize_only(core::pose::Pose &pose, const std::string &min_type, const float min_func_tol)	protocols::flexpep_docking::FlexPepDockingProtocol	private
movemap_	protocols::flexpep_docking::FlexPepDockingProtocol	private
movemap_minimizer_	protocols::flexpep_docking::FlexPepDockingProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::flexpep_docking::FlexPepDockingProtocol	static
name()	protocols::moves::Mover	inlinestatic
nres_peptide_	protocols::flexpep_docking::FlexPepDockingProtocol	private
nres_receptor_	protocols::flexpep_docking::FlexPepDockingProtocol	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::flexpep_docking::FlexPepDockingProtocol	virtual
peptide_random_loop_model(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
place_peptide_on_binding_site(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
polyAla(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
prepack_only(core::pose::Pose &pose, bool ppk_receptor, bool ppk_peptide)	protocols::flexpep_docking::FlexPepDockingProtocol	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::flexpep_docking::FlexPepDockingProtocol	static
random_peptide_phi_psi_perturbation(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
random_rb_pert(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
randomlySlidePeptideJump(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
rb_jump_	protocols::flexpep_docking::FlexPepDockingProtocol	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
rigidbody_monte_carlo_minimize(core::pose::Pose &pose, const int cycles, const std::string &min_type, const float trans_magnitude, const float rot_magnitude, const float minimization_threshold, const float func_tol)	protocols::flexpep_docking::FlexPepDockingProtocol	private
scorefxn_	protocols::flexpep_docking::FlexPepDockingProtocol	private
scorefxn_lowres_	protocols::flexpep_docking::FlexPepDockingProtocol	private
set_allowed_moves()	protocols::flexpep_docking::FlexPepDockingProtocol	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_default()	protocols::flexpep_docking::FlexPepDockingProtocol
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_receptor_constraints(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_foldtree(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
shear_moves(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
SlideIntoContact(core::pose::Pose &pose, core::Vector translate_axis)	protocols::flexpep_docking::FlexPepDockingProtocol	private
small_moves(core::pose::Pose &pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
storeJobStatistics(core::pose::Pose const &start_pose, core::pose::Pose &pose_after_lowres, core::pose::Pose &final_pose)	protocols::flexpep_docking::FlexPepDockingProtocol	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
torsions_monte_carlo_minimize(core::pose::Pose &pose, const int cycles, const std::string &min_type, const float minimization_threshold, const float min_func_tol)	protocols::flexpep_docking::FlexPepDockingProtocol	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
view(bool view_in)	protocols::flexpep_docking::FlexPepDockingProtocol	inline
view_	protocols::flexpep_docking::FlexPepDockingProtocol	private
~FlexPepDockingProtocol() override	protocols::flexpep_docking::FlexPepDockingProtocol