#include <AverageDegreeFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::AverageDegreeFilter:

Public Member Functions
	AverageDegreeFilter ()
	default ctor More...

bool	apply (core::pose::Pose const &pose) const override
	Constructor with a single target residue. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

core::Real	compute (core::pose::Pose const &pose) const

	~AverageDegreeFilter () override

core::pack::task::TaskFactoryOP	task_factory () const

void	task_factory (core::pack::task::TaskFactoryOP task_factory)

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

core::Real	threshold () const

void	threshold (core::Real threshold)

core::Real	distance_threshold () const

void	distance_threshold (core::Real const d)

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_

core::Real	threshold_

core::Real	distance_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::AverageDegreeFilter::parent

private

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::AverageDegreeFilter::AverageDegreeFilter ( )

default ctor

protocols::protein_interface_design::filters::AverageDegreeFilter::~AverageDegreeFilter ( )

overridedefault

Member Function Documentation

bool protocols::protein_interface_design::filters::AverageDegreeFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), and threshold().

std::string protocols::protein_interface_design::filters::AverageDegreeFilter::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::AverageDegreeFilterCreator::keyname(), name(), and provide_xml_schema().

protocols::filters::FilterOP protocols::protein_interface_design::filters::AverageDegreeFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::compute ( core::pose::Pose const & pose ) const

References core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), protocols::ligand_docking::ga_ligand_dock::count_neighbors(), core::kinematics::distance(), distance_threshold(), core::conformation::Conformation::num_chains(), core::conformation::Conformation::residue(), core::pose::Pose::residue(), core::pose::Pose::size(), task_factory(), and protocols::protein_interface_design::filters::TR().

Referenced by apply(), report(), and report_sm().

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::distance_threshold ( ) const

References distance_threshold_.

Referenced by compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::AverageDegreeFilter::distance_threshold ( core::Real const d )

References distance_threshold_.

protocols::filters::FilterOP protocols::protein_interface_design::filters::AverageDegreeFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

std::string protocols::protein_interface_design::filters::AverageDegreeFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::AverageDegreeFilter::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References distance_threshold(), core::pack::task::parse_task_operations(), task_factory(), threshold(), and protocols::protein_interface_design::filters::TR().

void protocols::protein_interface_design::filters::AverageDegreeFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::pack::task::attributes_for_parse_task_operations(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::protein_interface_design::filters::AverageDegreeFilterCreator::provide_xml_schema().

void protocols::protein_interface_design::filters::AverageDegreeFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::AverageDegreeFilter::task_factory ( ) const

References task_factory_.

Referenced by compute(), parse_my_tag(), and task_factory().

void protocols::protein_interface_design::filters::AverageDegreeFilter::task_factory ( core::pack::task::TaskFactoryOP task_factory )

References task_factory(), and task_factory_.

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::threshold ( ) const

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::AverageDegreeFilter::threshold ( core::Real threshold )

References protocols::hybridization::t, and threshold_.

Member Data Documentation

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::distance_threshold_

private

Referenced by distance_threshold().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::AverageDegreeFilter::task_factory_

private

Referenced by task_factory().

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::threshold_

private

Referenced by threshold().

The documentation for this class was generated from the following files:

src/protocols/protein_interface_design/filters/AverageDegreeFilter.hh
src/protocols/protein_interface_design/filters/AverageDegreeFilter.cc

Public Member Functions

Static Public Member Functions

Private Types

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation