core::io::StructFileRepOptions Member List

This is the complete list of members for core::io::StructFileRepOptions, including all inherited members.

append_schema_attributes(utility::tag::AttributeList &attributes)	core::io::StructFileRepOptions	static
auto_detect_glycan_connections() const	core::io::StructFileRepOptions
auto_detect_glycan_connections_	core::io::StructFileRepOptions	private
chains_whose_residues_are_separate_chemical_entities() const	core::io::StructFileRepOptions
chains_whose_residues_are_separate_chemical_entities_	core::io::StructFileRepOptions	private
check_if_residues_are_Ctermini() const	core::io::StructFileRepOptions
check_if_residues_are_Ctermini_	core::io::StructFileRepOptions	private
check_if_residues_are_Ntermini() const	core::io::StructFileRepOptions
check_if_residues_are_Ntermini_	core::io::StructFileRepOptions	private
clone() const	core::io::StructFileRepOptions	virtual
connect_info_cutoff() const	core::io::StructFileRepOptions
connect_info_cutoff_	core::io::StructFileRepOptions	private
constraints_from_link_records() const	core::io::StructFileRepOptions
constraints_from_link_records_	core::io::StructFileRepOptions	private
do_not_autoassign_SS() const	core::io::StructFileRepOptions
do_not_autoassign_SS_	core::io::StructFileRepOptions	private
exit_if_missing_heavy_atoms() const	core::io::StructFileRepOptions
exit_if_missing_heavy_atoms_	core::io::StructFileRepOptions	private
fold_tree_io() const	core::io::StructFileRepOptions
fold_tree_io_	core::io::StructFileRepOptions	private
guarantee_no_DNA() const	core::io::StructFileRepOptions
guarantee_no_DNA_	core::io::StructFileRepOptions	private
ignore_sugars() const	core::io::StructFileRepOptions
ignore_sugars_	core::io::StructFileRepOptions	private
ignore_unrecognized_res() const	core::io::StructFileRepOptions
ignore_unrecognized_res_	core::io::StructFileRepOptions	private
ignore_waters() const	core::io::StructFileRepOptions
ignore_waters_	core::io::StructFileRepOptions	private
ignore_zero_occupancy() const	core::io::StructFileRepOptions
ignore_zero_occupancy_	core::io::StructFileRepOptions	private
init_from_options(utility::options::OptionCollection const &options)	core::io::StructFileRepOptions	private
integration_test_mode() const	core::io::StructFileRepOptions
integration_test_mode_	core::io::StructFileRepOptions	private
keep_input_protonation_state() const	core::io::StructFileRepOptions
keep_input_protonation_state_	core::io::StructFileRepOptions	private
list_options_read(utility::options::OptionKeyList &read_options)	core::io::StructFileRepOptions	static
maintain_links() const	core::io::StructFileRepOptions
maintain_links_	core::io::StructFileRepOptions	private
max_bond_length() const	core::io::StructFileRepOptions
max_bond_length_	core::io::StructFileRepOptions	private
min_bond_length() const	core::io::StructFileRepOptions
min_bond_length_	core::io::StructFileRepOptions	private
missing_dens_as_jump() const	core::io::StructFileRepOptions
missing_dens_as_jump_	core::io::StructFileRepOptions	private
mmtf_extra_data_io() const	core::io::StructFileRepOptions
mmtf_extra_data_io_	core::io::StructFileRepOptions	private
no_chainend_ter() const	core::io::StructFileRepOptions
no_chainend_ter_	core::io::StructFileRepOptions	private
no_detect_pseudobonds() const	core::io::StructFileRepOptions
no_detect_pseudobonds_	core::io::StructFileRepOptions	private
no_output_cen() const	core::io::StructFileRepOptions
no_output_cen_	core::io::StructFileRepOptions	private
normalize_to_thk() const	core::io::StructFileRepOptions
normalize_to_thk_	core::io::StructFileRepOptions	private
operator<(StructFileRepOptions const &other) const	core::io::StructFileRepOptions
operator==(StructFileRepOptions const &other) const	core::io::StructFileRepOptions
output_alternate_atomids() const	core::io::StructFileRepOptions
output_alternate_atomids_	core::io::StructFileRepOptions	private
output_ligands_as_separate_chains() const	core::io::StructFileRepOptions
output_ligands_as_separate_chains_	core::io::StructFileRepOptions	private
output_only_asymmetric_unit() const	core::io::StructFileRepOptions
output_only_asymmetric_unit_	core::io::StructFileRepOptions	private
output_pose_cache() const	core::io::StructFileRepOptions
output_pose_cache_data_	core::io::StructFileRepOptions	private
output_pose_energies_table() const	core::io::StructFileRepOptions
output_pose_energies_table_	core::io::StructFileRepOptions	private
output_secondary_structure() const	core::io::StructFileRepOptions
output_secondary_structure_	core::io::StructFileRepOptions	private
output_torsions() const	core::io::StructFileRepOptions
output_torsions_	core::io::StructFileRepOptions	private
output_virtual() const	core::io::StructFileRepOptions
output_virtual_	core::io::StructFileRepOptions	private
output_virtual_zero_occ() const	core::io::StructFileRepOptions
output_virtual_zero_occ_	core::io::StructFileRepOptions	private
parse_my_tag(utility::tag::TagCOP tag)	core::io::StructFileRepOptions	virtual
pdb_author() const	core::io::StructFileRepOptions
pdb_author_	core::io::StructFileRepOptions	private
pdb_comments() const	core::io::StructFileRepOptions
pdb_comments_	core::io::StructFileRepOptions	private
pdb_parents() const	core::io::StructFileRepOptions
pdb_parents_	core::io::StructFileRepOptions	private
per_chain_renumbering() const	core::io::StructFileRepOptions
per_chain_renumbering_	core::io::StructFileRepOptions	private
preserve_crystinfo() const	core::io::StructFileRepOptions
preserve_crystinfo_	core::io::StructFileRepOptions	private
preserve_header() const	core::io::StructFileRepOptions
preserve_header_	core::io::StructFileRepOptions	private
randomize_missing_coords() const	core::io::StructFileRepOptions
randomize_missing_coords_	core::io::StructFileRepOptions	private
read_only_ATOM_entries() const	core::io::StructFileRepOptions
read_only_ATOM_entries_	core::io::StructFileRepOptions	private
remember_unrecognized_res() const	core::io::StructFileRepOptions
remember_unrecognized_res_	core::io::StructFileRepOptions	private
remember_unrecognized_water() const	core::io::StructFileRepOptions
remember_unrecognized_water_	core::io::StructFileRepOptions	private
renumber_pdb() const	core::io::StructFileRepOptions
renumber_pdb_	core::io::StructFileRepOptions	private
residues_for_atom_name_remapping() const	core::io::StructFileRepOptions
residues_for_atom_name_remapping_	core::io::StructFileRepOptions	private
set_auto_detect_glycan_connections(bool const auto_detect_glycan_connections)	core::io::StructFileRepOptions
set_chains_whose_residues_are_separate_chemical_entities(std::string const &setting)	core::io::StructFileRepOptions
set_check_if_residues_are_Ctermini(std::string const &check_if_residues_are_Ctermini)	core::io::StructFileRepOptions
set_check_if_residues_are_Ntermini(std::string const &check_if_residues_are_Ntermini)	core::io::StructFileRepOptions
set_connect_info_cutoff(core::Real const &connect_info_cutoff)	core::io::StructFileRepOptions
set_constraints_from_link_records(bool const setting)	core::io::StructFileRepOptions
set_do_not_autoassign_SS(bool const do_not_autoassign_SS)	core::io::StructFileRepOptions
set_exit_if_missing_heavy_atoms(bool const exit_if_missing_heavy_atoms)	core::io::StructFileRepOptions
set_fold_tree_io(bool const fold_tree_io)	core::io::StructFileRepOptions
set_guarantee_no_DNA(bool const guarantee_no_DNA)	core::io::StructFileRepOptions
set_ignore_sugars(bool const setting)	core::io::StructFileRepOptions
set_ignore_unrecognized_res(bool const ignore_unrecognized_res)	core::io::StructFileRepOptions
set_ignore_waters(bool const ignore_waters)	core::io::StructFileRepOptions
set_ignore_zero_occupancy(bool const ignore_zero_occupancy)	core::io::StructFileRepOptions
set_integration_test_mode(bool const setting)	core::io::StructFileRepOptions
set_keep_input_protonation_state(bool const keep_input_protonation_state)	core::io::StructFileRepOptions
set_maintain_links(bool const maintain_links)	core::io::StructFileRepOptions
set_max_bond_length(core::Real const max_bond_length)	core::io::StructFileRepOptions
set_min_bond_length(core::Real const min_bond_length)	core::io::StructFileRepOptions
set_missing_dens_as_jump(bool const missing_dens_as_jump)	core::io::StructFileRepOptions
set_mmtf_extra_data_io(bool const setting)	core::io::StructFileRepOptions
set_no_chainend_ter(bool const no_chainend_ter)	core::io::StructFileRepOptions
set_no_detect_pseudobonds(bool const setting)	core::io::StructFileRepOptions
set_no_output_cen(bool const no_output_cen)	core::io::StructFileRepOptions
set_normalize_to_thk(bool const normalize_to_thk)	core::io::StructFileRepOptions
set_output_alternate_atomids(bool const output_alternate_atomids)	core::io::StructFileRepOptions
set_output_ligands_as_separate_chains(bool const output_ligands_as_separate_chains)	core::io::StructFileRepOptions
set_output_only_asymmetric_unit(bool const output_only_asymmetric_unit)	core::io::StructFileRepOptions
set_output_pose_cache_data(bool const setting)	core::io::StructFileRepOptions
set_output_pose_energies_table(bool const setting)	core::io::StructFileRepOptions
set_output_secondary_structure(bool const output_secondary_structure)	core::io::StructFileRepOptions
set_output_torsions(bool const output_torsions)	core::io::StructFileRepOptions
set_output_virtual(bool const output_virtual)	core::io::StructFileRepOptions
set_output_virtual_zero_occ(bool const output_virtual_zero_occ)	core::io::StructFileRepOptions
set_pdb_author(std::string const &pdb_author)	core::io::StructFileRepOptions
set_pdb_comments(bool const pdb_comments)	core::io::StructFileRepOptions
set_pdb_parents(bool const pdb_parents)	core::io::StructFileRepOptions
set_per_chain_renumbering(bool const per_chain_renumbering)	core::io::StructFileRepOptions
set_preserve_crystinfo(bool const preserve_crystinfo)	core::io::StructFileRepOptions
set_preserve_header(bool const preserve_header)	core::io::StructFileRepOptions
set_randomize_missing_coords(bool const randomize_missing_coords)	core::io::StructFileRepOptions
set_read_only_ATOM_entries(bool const setting)	core::io::StructFileRepOptions
set_remember_unrecognized_res(bool const remember_unrecognized_res)	core::io::StructFileRepOptions
set_remember_unrecognized_water(bool const remember_unrecognized_water)	core::io::StructFileRepOptions
set_renumber_pdb(bool const setting)	core::io::StructFileRepOptions
set_residues_for_atom_name_remapping(utility::vector1< std::string > const &setting)	core::io::StructFileRepOptions
set_show_all_fixes(bool const setting)	core::io::StructFileRepOptions
set_skip_connect_info(bool const skip_connect_info)	core::io::StructFileRepOptions
set_suppress_zero_occ_pdb_output(bool const setting)	core::io::StructFileRepOptions
set_use_pdb_format_HETNAM_records(bool const setting)	core::io::StructFileRepOptions
set_write_all_connect_info(bool const setting)	core::io::StructFileRepOptions
set_write_glycan_pdb_codes(bool const write_glycan_pdb_codes)	core::io::StructFileRepOptions
set_write_pdb_link_records(bool const setting)	core::io::StructFileRepOptions
set_write_pdb_parametric_info(bool const setting)	core::io::StructFileRepOptions
set_write_pdb_title_section_records(bool const setting)	core::io::StructFileRepOptions
set_write_seqres_records(bool const setting)	core::io::StructFileRepOptions
show_all_fixes() const	core::io::StructFileRepOptions
show_all_fixes_	core::io::StructFileRepOptions	private
skip_connect_info() const	core::io::StructFileRepOptions
skip_connect_info_	core::io::StructFileRepOptions	private
StructFileRepOptions()	core::io::StructFileRepOptions
StructFileRepOptions(utility::options::OptionCollection const &options)	core::io::StructFileRepOptions
suppress_zero_occ_pdb_output() const	core::io::StructFileRepOptions
suppress_zero_occ_pdb_output_	core::io::StructFileRepOptions	private
type() const	core::io::StructFileRepOptions	virtual
use_pdb_format_HETNAM_records() const	core::io::StructFileRepOptions
use_pdb_format_HETNAM_records_	core::io::StructFileRepOptions	private
write_all_connect_info() const	core::io::StructFileRepOptions
write_all_connect_info_	core::io::StructFileRepOptions	private
write_glycan_pdb_codes() const	core::io::StructFileRepOptions
write_glycan_pdb_codes_	core::io::StructFileRepOptions	private
write_pdb_link_records() const	core::io::StructFileRepOptions
write_pdb_link_records_	core::io::StructFileRepOptions	private
write_pdb_parametric_info() const	core::io::StructFileRepOptions
write_pdb_parametric_info_	core::io::StructFileRepOptions	private
write_pdb_title_section_records() const	core::io::StructFileRepOptions
write_pdb_title_section_records_	core::io::StructFileRepOptions	private
write_seqres_records() const	core::io::StructFileRepOptions
write_seqres_records_	core::io::StructFileRepOptions	private
~StructFileRepOptions() override	core::io::StructFileRepOptions