| add_residue_pair(core::chemical::ResidueType const &residue1, core::chemical::ResidueType const &residue2) | protocols::jumping::ResiduePairJump | |
| add_residue_single(core::chemical::ResidueType const &residue) | protocols::jumping::ResiduePairJump | |
| apply_dof_conformer(std::map< dofType, core::Size > const &conformer_map) | protocols::jumping::ResiduePairJump | |
| build_cst_conformer_jumps() | protocols::jumping::ResiduePairJump | |
| build_sidechain_rotamers() | protocols::jumping::ResiduePairJump | |
| cst_conformers_ | protocols::jumping::ResiduePairJump | private |
| cst_jumps_ | protocols::jumping::ResiduePairJump | private |
| cstAtoms(core::Size i) const | protocols::jumping::ResiduePairJump | inline |
| cstAtoms_defined() const | protocols::jumping::ResiduePairJump | inline |
| cstInfoMap typedef | protocols::jumping::ResiduePairJump | private |
| cstInfoMap_ | protocols::jumping::ResiduePairJump | private |
| cstInfoMap_defined() const | protocols::jumping::ResiduePairJump | inline |
| cstInfoMapIterator typedef | protocols::jumping::ResiduePairJump | private |
| diversify_cst_conformers(cstType type, core::Size max_index) | protocols::jumping::ResiduePairJump | |
| diversify_cst_conformers() | protocols::jumping::ResiduePairJump | |
| diversify_dof_conformers(dofType type, core::Size max_index) | protocols::jumping::ResiduePairJump | |
| diversify_dof_conformers() | protocols::jumping::ResiduePairJump | |
| dof_conformers_ | protocols::jumping::ResiduePairJump | private |
| generate_frame() | protocols::jumping::ResiduePairJump | |
| init_mini_pose() | protocols::jumping::ResiduePairJump | |
| jumpAtoms(core::Size i) const | protocols::jumping::ResiduePairJump | inline |
| jumpAtoms_defined() const | protocols::jumping::ResiduePairJump | inline |
| miniPose_ | protocols::jumping::ResiduePairJump | private |
| ResiduePairJump() | protocols::jumping::ResiduePairJump | |
| ResiduePairJump(core::chemical::ResidueType const &residue1, core::chemical::ResidueType const &residue2) | protocols::jumping::ResiduePairJump | |
| residues_ | protocols::jumping::ResiduePairJump | private |
| rotsets_ | protocols::jumping::ResiduePairJump | private |
| set_cstAtoms(core::Size rsd, core::Size atom, std::string name) | protocols::jumping::ResiduePairJump | inline |
| set_cstInfo(cstType type, core::Real value) | protocols::jumping::ResiduePairJump | |
| set_cstInfo(cstType type, utility::vector1< core::Real > const &values) | protocols::jumping::ResiduePairJump | |
| set_jumpAtoms(core::Size rsd, core::Size atom, std::string name) | protocols::jumping::ResiduePairJump | inline |
| ~ResiduePairJump() override | protocols::jumping::ResiduePairJump | |
1.8.7