| cdf_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| check_linestream(std::istringstream const &linestream, std::string const &filename, bool const fail_on_eof=true) const | core::chemical::mainchain_potential::MainchainScoreTable | private |
| clear() | core::chemical::mainchain_potential::MainchainScoreTable | |
| clone() const | core::chemical::mainchain_potential::MainchainScoreTable | |
| dimension_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| draw_random_mainchain_torsion_values(utility::vector1< core::Real > &torsions) const | core::chemical::mainchain_potential::MainchainScoreTable | |
| energies_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| energies_from_probs(numeric::MathNTensorBaseOP< core::Real > energies, numeric::MathNTensorBaseCOP< core::Real > probs, core::Real const &kbt) const | core::chemical::mainchain_potential::MainchainScoreTable | private |
| energies_spline_1D_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| energies_spline_2D_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| energies_spline_ND_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| energy(utility::vector1< core::Real > coords) const | core::chemical::mainchain_potential::MainchainScoreTable | |
| energy_tensor(utility::vector1< core::Size > const &coords) const | core::chemical::mainchain_potential::MainchainScoreTable | |
| finalize_de_novo_scoretable_from_energies(core::Real const &kbt, bool const normalize) | core::chemical::mainchain_potential::MainchainScoreTable | |
| get_mainchain_torsions_covered() const | core::chemical::mainchain_potential::MainchainScoreTable | inline |
| get_mainchain_torsions_from_coords(utility::vector1< core::Size > const &coords_in, utility::vector1< core::Real > &torsions_out, bool const offset_if_symmetric=true) const | core::chemical::mainchain_potential::MainchainScoreTable | |
| get_opposite_coord(utility::vector1< core::Size > const &coord, numeric::MathNTensorBaseCOP< core::Real > tensor, utility::vector1< core::Size > &opposite_coord) const | core::chemical::mainchain_potential::MainchainScoreTable | private |
| gradient(utility::vector1< core::Real > coords_in, utility::vector1< core::Real > &gradient_out) const | core::chemical::mainchain_potential::MainchainScoreTable | |
| increment_coords(utility::vector1< core::Size > &coords, numeric::MathNTensorBaseCOP< core::Real > tensor) const | core::chemical::mainchain_potential::MainchainScoreTable | private |
| increment_energy_coords(utility::vector1< core::Size > &coords) const | core::chemical::mainchain_potential::MainchainScoreTable | |
| initialize_for_de_novo_generation(core::chemical::ResidueType const &restype, utility::vector1< core::Size > const &dimensions, utility::vector1< core::Size > const &mainchain_torsions_covered, bool const symmetrize) | core::chemical::mainchain_potential::MainchainScoreTable | |
| initialize_tensors(utility::vector1< core::Size > dimensions) | core::chemical::mainchain_potential::MainchainScoreTable | private |
| initialized() const | core::chemical::mainchain_potential::MainchainScoreTable | inline |
| initialized_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| iteratively_correct_energy_tensor(core::Real const &entropy) | core::chemical::mainchain_potential::MainchainScoreTable | private |
| mainchain_torsions_covered_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| MainchainScoreTable() | core::chemical::mainchain_potential::MainchainScoreTable | |
| n_mainchain_torsions_total_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| parse_rama_map_file_shapovalov(std::string const &filename, std::string const &file_contents, std::string const &res_type_name, bool const use_polycubic_interpolation) | core::chemical::mainchain_potential::MainchainScoreTable | |
| probabilities_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| set_dimension_and_ntorsions_for_restype(core::chemical::ResidueType const &restype, utility::vector1< core::Size > const &dimensions, utility::vector1< core::Size > mainchain_torsions_covered) | core::chemical::mainchain_potential::MainchainScoreTable | private |
| set_energy(utility::vector1< core::Size > const &coords, core::Real const &energy_in) | core::chemical::mainchain_potential::MainchainScoreTable | |
| set_initialized() | core::chemical::mainchain_potential::MainchainScoreTable | private |
| set_symmetrize_gly(bool const setting_in) | core::chemical::mainchain_potential::MainchainScoreTable | |
| set_up_cumulative_distribution_function(numeric::MathNTensorBaseCOP< core::Real > probs, numeric::MathNTensorBaseOP< core::Real > cdf) const | core::chemical::mainchain_potential::MainchainScoreTable | private |
| set_up_polycubic_interpolation(utility::vector1< core::Real > const &offsets, utility::vector1< core::Size > const &dimensions) | core::chemical::mainchain_potential::MainchainScoreTable | private |
| symmetrize_gly() const | core::chemical::mainchain_potential::MainchainScoreTable | inline |
| symmetrize_gly_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| symmetrize_tensor(numeric::MathNTensorBaseOP< core::Real > tensor) const | core::chemical::mainchain_potential::MainchainScoreTable | private |
| use_polycubic_interpolation_ | core::chemical::mainchain_potential::MainchainScoreTable | private |
| write_mainchain_scoretable_to_stream(std::stringstream &outstream) const | core::chemical::mainchain_potential::MainchainScoreTable | |
1.8.7