TaskOperation to Disable Packing and/or design of a set of CDRs. By default, disables both Packing and Design of all CDRs. More...

#include <DisableCDRsOperation.hh>

Inheritance diagram for protocols::antibody::task_operations::DisableCDRsOperation:

[legend]

Public Member Functions
	DisableCDRsOperation ()
	Default Constructor. More...

	DisableCDRsOperation (AntibodyInfoCOP ab_info)
	Regular Constructor. More...

	DisableCDRsOperation (AntibodyInfoCOP ab_info, utility::vector1< bool > const &cdrs)
	Constructor Specifying set of cdrs to use. More...

	DisableCDRsOperation (AntibodyInfoCOP ab_info, utility::vector1< bool > const &cdrs, bool disable_packing_and_design)
	Constructor Specifying set of cdrs and what to disable. More...

	~DisableCDRsOperation () override

	DisableCDRsOperation (DisableCDRsOperation const &src)

core::pack::task::operation::TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...

void	parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Configure from a RosettaScripts XML tag. More...

void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...

void	set_cdrs (utility::vector1< bool > const &cdrs)
	Set the CDRs we will be disabling - 6/8 long vector corresponding to Enum. More...

void	set_cdr_only (CDRNameEnum cdr)
	Set only a single CDR to disable. More...

void	set_disable_packing_and_design (bool disable_packing_and_design)
	Set to disable packing and design, or only just design. More...

void	set_defaults ()

Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	keyname ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
AntibodyInfoCOP	ab_info_

utility::vector1< bool >	cdrs_

bool	disable_packing_and_design_

AntibodyNumberingSchemeEnum	numbering_scheme_
	Needed for default and RS constructor. More...

CDRDefinitionEnum	cdr_definition_

Additional Inherited Members
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP

typedef basic::datacache::DataMap	DataMap

typedef pose::Pose	Pose

Detailed Description

TaskOperation to Disable Packing and/or design of a set of CDRs. By default, disables both Packing and Design of all CDRs.

See options for setting specific CDRs and whether to only disable design.

Constructor & Destructor Documentation

protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation ( )

Default Constructor.

References set_defaults().

protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation ( AntibodyInfoCOP ab_info )

Regular Constructor.

References set_defaults().

protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation	(	AntibodyInfoCOP	ab_info,
		utility::vector1< bool > const &	cdrs
	)

Constructor Specifying set of cdrs to use.

References set_cdrs(), and set_defaults().

protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation	(	AntibodyInfoCOP	ab_info,
		utility::vector1< bool > const &	cdrs,
		bool	disable_packing_and_design
	)

Constructor Specifying set of cdrs and what to disable.

References disable_packing_and_design_, set_cdrs(), and set_defaults().

protocols::antibody::task_operations::DisableCDRsOperation::~DisableCDRsOperation ( )

overridedefault

protocols::antibody::task_operations::DisableCDRsOperation::DisableCDRsOperation ( DisableCDRsOperation const & src )

References ab_info_.

Member Function Documentation

void protocols::antibody::task_operations::DisableCDRsOperation::apply	(	core::pose::Pose const &	,
		core::pack::task::PackerTask &
	)		const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References ab_info_, core::pack::task::operation::RestrictResidueToRepacking::apply(), core::pack::task::operation::PreventRepacking::apply(), cdr_definition_, protocols::antibody::CDRNameEnum_proto_total, cdrs_, disable_packing_and_design_, core::sequence::end, core::pack::task::operation::RestrictResidueToRepacking::include_residue(), core::pack::task::operation::PreventRepacking::include_residue(), numbering_scheme_, and protocols::loops::start.

core::pack::task::operation::TaskOperationOP protocols::antibody::task_operations::DisableCDRsOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

std::string protocols::antibody::task_operations::DisableCDRsOperation::keyname ( )

static

Referenced by protocols::antibody::task_operations::DisableCDRsOperationCreator::keyname(), and provide_xml_schema().

void protocols::antibody::task_operations::DisableCDRsOperation::parse_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &
	)

overridevirtual

Configure from a RosettaScripts XML tag.

Reimplemented from core::pack::task::operation::TaskOperation.

References cdr_definition_, protocols::antibody::AntibodyEnumManager::cdr_definition_string_to_enum(), cdrs_, disable_packing_and_design_, protocols::antibody::get_cdr_bool_from_tag(), numbering_scheme_, protocols::antibody::AntibodyEnumManager::numbering_scheme_string_to_enum(), and protocols::antibody::TR().

void protocols::antibody::task_operations::DisableCDRsOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References protocols::antibody::attributes_for_get_cdr_bool_from_tag(), keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::antibody::task_operations::DisableCDRsOperationCreator::provide_xml_schema().

void protocols::antibody::task_operations::DisableCDRsOperation::set_cdr_only ( CDRNameEnum cdr )

Set only a single CDR to disable.

References protocols::antibody::CDRNameEnum_proto_total, and cdrs_.

void protocols::antibody::task_operations::DisableCDRsOperation::set_cdrs ( utility::vector1< bool > const & cdrs )

Set the CDRs we will be disabling - 6/8 long vector corresponding to Enum.

References protocols::antibody::CDRNameEnum_proto_total, and cdrs_.

Referenced by DisableCDRsOperation().

void protocols::antibody::task_operations::DisableCDRsOperation::set_defaults ( )

References cdr_definition_, protocols::antibody::AntibodyEnumManager::cdr_definition_string_to_enum(), cdrs_, disable_packing_and_design_, protocols::antibody::h4, protocols::antibody::l4, numbering_scheme_, and protocols::antibody::AntibodyEnumManager::numbering_scheme_string_to_enum().

Referenced by DisableCDRsOperation().

void protocols::antibody::task_operations::DisableCDRsOperation::set_disable_packing_and_design ( bool disable_packing_and_design )

Set to disable packing and design, or only just design.

References disable_packing_and_design_.

Member Data Documentation

AntibodyInfoCOP protocols::antibody::task_operations::DisableCDRsOperation::ab_info_

private

Referenced by apply(), and DisableCDRsOperation().

CDRDefinitionEnum protocols::antibody::task_operations::DisableCDRsOperation::cdr_definition_

private

Referenced by apply(), parse_tag(), and set_defaults().

utility::vector1<bool> protocols::antibody::task_operations::DisableCDRsOperation::cdrs_

private

Referenced by apply(), parse_tag(), set_cdr_only(), set_cdrs(), and set_defaults().

bool protocols::antibody::task_operations::DisableCDRsOperation::disable_packing_and_design_

private

Referenced by apply(), DisableCDRsOperation(), parse_tag(), set_defaults(), and set_disable_packing_and_design().

AntibodyNumberingSchemeEnum protocols::antibody::task_operations::DisableCDRsOperation::numbering_scheme_

private

Needed for default and RS constructor.

Referenced by apply(), parse_tag(), and set_defaults().

The documentation for this class was generated from the following files:

src/protocols/antibody/task_operations/DisableCDRsOperation.hh
src/protocols/antibody/task_operations/DisableCDRsOperation.cc

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation