score_function_corrections.cc File Reference

Initialize Score Funciton Corrections. More...

#include <core/init/score_function_corrections.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/corrections.OptionKeys.gen.hh>
#include <basic/options/keys/cryst.OptionKeys.gen.hh>
#include <basic/options/keys/ddg.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/mistakes.OptionKeys.gen.hh>
#include <basic/options/keys/qsar.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/optimization.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <basic/options/keys/dna.OptionKeys.gen.hh>
#include <basic/options/keys/rings.OptionKeys.gen.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <utility/options/OptionCollection.hh>
#include <core/types.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <istream>
#include <string>

Classes
struct	core::init::pre_talaris_2013_behavior_settings

Namespaces
	core
	A class for reading in the atom type properties.
	core::init

Functions
static basic::Tracer	TR ("core.init.score_function_corrections")
static basic::Tracer	core::init::TR ("core.init.score_function_corrections")
void	core::init::init_score_function_corrections (utility::options::OptionCollection &options)
	Initialize the latest and greatest score function parameters. More...
void	core::init::init_revert_to_pre_talaris_2013_mistake (utility::options::OptionCollection &options)
	Initialize the "revert to before Talaris2013" mistake. More...
void	core::init::revert_to_pre_talaris_2013_defaults (utility::options::OptionCollection &options)
	Reset a set of flags to their pre-talaris behavior. More...
void	core::init::init_pre_beta_nov15_etable (utility::options::OptionCollection &options)
	Initialize the -pre_beta_nov15 etable. More...
void	core::init::init_revert_to_talaris (utility::options::OptionCollection &options)
	Initialize the revert-to-Talaris2014. More...
void	core::init::init_hbond_sp2_correction (utility::options::OptionCollection &options)
	Initialize the hbond Sp2 correction Deprecated as Talaris2013 becomes default. More...
void	core::init::init_facts_correction (utility::options::OptionCollection &options)
	Initialize the FACTS correction. More...
void	core::init::init_correct_correction (utility::options::OptionCollection &options)
	Initialize the -correct correction. More...
void	core::init::init_shapovalov_lib_fixes_enable_correction (utility::options::OptionCollection &options)
	Initialize the -shapovalov_lib_fixes_enable correction. More...
void	core::init::init_crystal_refinement_correction (utility::options::OptionCollection &options)
	Initialize the crystal refinement correction. More...
void	core::init::init_beta_correction (utility::options::OptionCollection &options)
	Initialize the most recent beta score function (-beta) More...
void	core::init::init_beta_july15_correction (utility::options::OptionCollection &options)
	Initialize the -beta_july15 score function. More...
void	core::init::init_beta_nov16_correction (utility::options::OptionCollection &options, bool setweight=true)
	Initialize the -beta_nov16 score function. More...
void	core::init::init_nonideal_correction (utility::options::OptionCollection &options)
	Initialize nonideal bond geometry correction. More...
void	core::init::init_restore_score12prime (utility::options::OptionCollection &options)
	restore the the score function to the Score12prime version More...
void	core::init::init_spades_score_function_correction (utility::options::OptionCollection &options)
	Alter the water/water and water/non-water solvation potential if the score:water_hybrid_sf flag is on the command line. More...
void	core::init::init_gen_potential_settings (utility::options::OptionCollection &options)
	Initialize new atom types for Rosetta generic potential. More...
void	core::init::init_dna_correction (utility::options::OptionCollection &options)
	Apply some DNA-specific mods that are still in testing phase; only if -corrections::newdna present. More...

Variables
pre_talaris_2013_behavior_settings const	core::init::restore_sc12_settings

Detailed Description

Initialize Score Funciton Corrections.

Author

Matthew O'Meara

Frank and/or Hahnbeom did the beta 15 stuff

Function Documentation

static basic::Tracer TR ( "core.init.score_function_corrections"  )

static