| accept_log_ | protocols::carbohydrates::GlycanSampler | private |
| apply(core::pose::Pose &pose) override | protocols::carbohydrates::GlycanSampler | virtual |
| apply_to_res(core::pose::Pose &pose, core::Size resnum, core::kinematics::MoveMapOP mm, core::scoring::ScoreFunctionOP score, core::Size round) | protocols::carbohydrates::GlycanSampler | private |
| cartmin_ | protocols::carbohydrates::GlycanSampler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::carbohydrates::GlycanSampler | virtual |
| create() | protocols::moves::Mover | virtual |
| final_min_ | protocols::carbohydrates::GlycanSampler | private |
| final_residue_subset_ | protocols::carbohydrates::GlycanSampler | private |
| force_total_rounds(core::Size total_rounds) | protocols::carbohydrates::GlycanSampler | |
| forced_total_rounds_ | protocols::carbohydrates::GlycanSampler | private |
| fresh_instance() const override | protocols::carbohydrates::GlycanSampler | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_glycan_sampler_rounds() | protocols::carbohydrates::GlycanSampler | |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::carbohydrates::GlycanSampler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| GlycanSampler() | protocols::carbohydrates::GlycanSampler | |
| GlycanSampler(core::select::residue_selector::ResidueSelectorCOP selector, core::scoring::ScoreFunctionCOP scorefxn, core::Size rounds=75) | protocols::carbohydrates::GlycanSampler | |
| GlycanSampler(GlycanSampler const &src) | protocols::carbohydrates::GlycanSampler | |
| idealize_glycan_residues(core::pose::Pose &pose, utility::vector1< core::Size > const &tree_subset) const | protocols::carbohydrates::GlycanSampler | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init_objects(core::pose::Pose &pose) | protocols::carbohydrates::GlycanSampler | private |
| inner_ncycles_ | protocols::carbohydrates::GlycanSampler | private |
| kt_ | protocols::carbohydrates::GlycanSampler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| linkage_mover_ | protocols::carbohydrates::GlycanSampler | private |
| match_sampling_of_modeler_ | protocols::carbohydrates::GlycanSampler | private |
| mc_ | protocols::carbohydrates::GlycanSampler | private |
| min_mover_ | protocols::carbohydrates::GlycanSampler | private |
| min_rings_ | protocols::carbohydrates::GlycanSampler | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::carbohydrates::GlycanSampler | static |
| name() | protocols::moves::Mover | inlinestatic |
| pack_distance_ | protocols::carbohydrates::GlycanSampler | private |
| packer_ | protocols::carbohydrates::GlycanSampler | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::carbohydrates::GlycanSampler | virtual |
| parsed_positions_ | protocols::carbohydrates::GlycanSampler | private |
| population_based_conformer_sampling_ | protocols::carbohydrates::GlycanSampler | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const override | protocols::carbohydrates::GlycanSampler | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::carbohydrates::GlycanSampler | static |
| pymol_movie_ | protocols::carbohydrates::GlycanSampler | private |
| randomize_first_ | protocols::carbohydrates::GlycanSampler | private |
| randomize_glycan_torsions(core::pose::Pose &pose, utility::vector1< bool > const &subset) const | protocols::carbohydrates::GlycanSampler | |
| refine_ | protocols::carbohydrates::GlycanSampler | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const override | protocols::carbohydrates::GlycanSampler | inlinevirtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| root_prob_sampling_ | protocols::carbohydrates::GlycanSampler | private |
| rounds_ | protocols::carbohydrates::GlycanSampler | private |
| scorefxn_ | protocols::carbohydrates::GlycanSampler | private |
| selector_ | protocols::carbohydrates::GlycanSampler | private |
| set_cmd_line_defaults() | protocols::carbohydrates::GlycanSampler | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_defaults() | protocols::carbohydrates::GlycanSampler | |
| set_inner_bb_cycles(core::Size inner_bb_cycles) | protocols::carbohydrates::GlycanSampler | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_kt(core::Real kt) | protocols::carbohydrates::GlycanSampler | |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_min_rings(bool min_rings) | protocols::carbohydrates::GlycanSampler | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_population_based_conformer_sampling(bool pop_based_sampling) | protocols::carbohydrates::GlycanSampler | |
| set_protein_linkage_prob_sampling(bool root_probs) | protocols::carbohydrates::GlycanSampler | |
| set_randomize_first(bool randomize_first) | protocols::carbohydrates::GlycanSampler | |
| set_refine(bool refine) | protocols::carbohydrates::GlycanSampler | |
| set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector) | protocols::carbohydrates::GlycanSampler | |
| set_rounds(core::Size rounds) | protocols::carbohydrates::GlycanSampler | |
| set_scorefunction(core::scoring::ScoreFunctionCOP scorefxn) | protocols::carbohydrates::GlycanSampler | |
| set_selector(core::select::residue_selector::ResidueSelectorCOP selector) | protocols::carbohydrates::GlycanSampler | |
| set_taskfactory(core::pack::task::TaskFactoryCOP tf) | protocols::carbohydrates::GlycanSampler | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_use_gaussian_sampling(bool use_gaussian_sampling) | protocols::carbohydrates::GlycanSampler | |
| set_use_shear(bool use_shear) | protocols::carbohydrates::GlycanSampler | |
| setup_cartmin(core::scoring::ScoreFunctionOP scorefxn) const | protocols::carbohydrates::GlycanSampler | private |
| setup_default_task_factory(utility::vector1< bool > const &glycan_residues, core::pose::Pose const &pose) | protocols::carbohydrates::GlycanSampler | private |
| setup_movers(core::pose::Pose &pose, utility::vector1< bool > const &dihedral_subset, utility::vector1< bool > const &sugar_bb_subset, utility::vector1< bool > const &subset) | protocols::carbohydrates::GlycanSampler | private |
| setup_packer(core::pose::Pose &pose, utility::vector1< bool > const &full_subset) | protocols::carbohydrates::GlycanSampler | private |
| setup_score_function() | protocols::carbohydrates::GlycanSampler | private |
| shear_ | protocols::carbohydrates::GlycanSampler | private |
| show(std::ostream &output=std::cout) const override | protocols::carbohydrates::GlycanSampler | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_ | protocols::carbohydrates::GlycanSampler | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| tf_ | protocols::carbohydrates::GlycanSampler | private |
| total_glycan_residues_ | protocols::carbohydrates::GlycanSampler | private |
| tree_based_min_pack_ | protocols::carbohydrates::GlycanSampler | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| use_cartmin(bool use_cartmin) | protocols::carbohydrates::GlycanSampler | |
| use_gaussian_sampling_ | protocols::carbohydrates::GlycanSampler | private |
| use_shear_ | protocols::carbohydrates::GlycanSampler | private |
| weighted_random_mover_ | protocols::carbohydrates::GlycanSampler | private |
| ~GlycanSampler() override | protocols::carbohydrates::GlycanSampler | |
1.8.7