MPHelicalityEnergy.cc File Reference

Fullatom and centroid level smooth membrane non-helicality penalty. More...

#include <core/energy_methods/MPHelicalityEnergy.hh>
#include <core/energy_methods/MPHelicalityEnergyCreator.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/membrane/MembraneInfo.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <core/conformation/Atom.hh>
#include <core/id/AtomID.hh>
#include <core/pose/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/TwelveANeighborGraph.hh>
#include <core/scoring/ContextGraphTypes.hh>
#include <utility/graph/Graph.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/scoring/membrane/MembraneData.hh>
#include <core/pose/Pose.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <numeric/interpolation/spline/CubicSpline.hh>
#include <numeric/MathMatrix.hh>
#include <numeric/MathVector.srlz.hh>
#include <map>
#include <math.h>
#include <set>

Namespaces
	core
	A class for reading in the atom type properties.
	core::energy_methods

Functions
static basic::Tracer	TR ("core.energy_methods.MPHelicalityEnergy")

Variables
Real const	core::energy_methods::slope_6 = 0.15
Real const	core::energy_methods::offset_6 = 20.0
Real const	core::energy_methods::slope_12 = 0.5
Real const	core::energy_methods::offset_12 = 475.0
Real const	core::energy_methods::sixA_slope = 0.15
Real const	core::energy_methods::sixA_offset = 20
Real const	core::energy_methods::twelveA_slope = 5
Real const	core::energy_methods::twelveA_offset = 220.0

Detailed Description

Fullatom and centroid level smooth membrane non-helicality penalty.

Modified: 20/2/17

Author

Jonathan Weinstein (jonat.nosp@m.han..nosp@m.weins.nosp@m.tein.nosp@m.@weiz.nosp@m.mann.nosp@m..ac.i.nosp@m.l)

Assaf Elazar

Sarel Fleishman

Function Documentation

static basic::Tracer TR ( "core.energy_methods.MPHelicalityEnergy"  )

static