protocols::sewing::hashing::AlignmentGenerator Class Reference

This class contains the infrastructure for parsing an edge file and for generating all possible alignments for a given edge. More...

#include <AlignmentGenerator.hh>

Inheritance diagram for protocols::sewing::hashing::AlignmentGenerator:

Public Member Functions
	AlignmentGenerator ()
	AlignmentGenerator (HasherSettings const &hasher_settings, SegmentVectorCOP segment_vector)
	AlignmentGenerator (HasherSettings const &hasher_settings, SegmentVectorCOP segment_vector, std::map< core::Size, data_storage::SmartSegmentOP > pdbsegs)
	AlignmentGenerator (AlignmentGenerator const &src)
	~AlignmentGenerator () override
utility::vector1< std::pair < core::Size, core::Size > >	get_all_alignments (data_storage::SmartSegmentCOP s1, data_storage::SmartSegmentCOP s2)
	Determines all possible basis pairs for an edge given the two SewSegments involved. More...
AlignmentGeneratorOP	clone () const
SegmentVectorCOP	segment_vector () const
HasherSettings	hasher_settings () const
std::map< core::Size, data_storage::SmartSegmentOP > &	pdb_segments ()
std::map< core::Size, data_storage::SmartSegmentOP >	const_pdb_segments () const
void	segment_vector (SegmentVectorCOP segvec)
void	hasher_settings (HasherSettings &hs)
void	pdb_segments (std::map< core::Size, data_storage::SmartSegmentOP > &)

Private Attributes
HasherSettings	hasher_settings_
SegmentVectorCOP	segment_vector_
std::map< core::Size, data_storage::SmartSegmentOP >	pdb_segments_

Detailed Description

This class contains the infrastructure for parsing an edge file and for generating all possible alignments for a given edge.

Constructor & Destructor Documentation

protocols::sewing::hashing::AlignmentGenerator::AlignmentGenerator

(

)

protocols::sewing::hashing::AlignmentGenerator::AlignmentGenerator	(	HasherSettings const &	hasher_settings,
		SegmentVectorCOP	segment_vector
	)

protocols::sewing::hashing::AlignmentGenerator::AlignmentGenerator	(	HasherSettings const &	hasher_settings,
		SegmentVectorCOP	segment_vector,
		std::map< core::Size, data_storage::SmartSegmentOP >	pdbsegs
	)

protocols::sewing::hashing::AlignmentGenerator::AlignmentGenerator

(

AlignmentGenerator const &

src

)

protocols::sewing::hashing::AlignmentGenerator::~AlignmentGenerator ( )

override

Member Function Documentation

AlignmentGeneratorOP protocols::sewing::hashing::AlignmentGenerator::clone

(

)

const

std::map< core::Size, data_storage::SmartSegmentOP > protocols::sewing::hashing::AlignmentGenerator::const_pdb_segments

(

)

const

References pdb_segments_.

utility::vector1< std::pair< core::Size, core::Size > > protocols::sewing::hashing::AlignmentGenerator::get_all_alignments	(	data_storage::SmartSegmentCOP	s1,
		data_storage::SmartSegmentCOP	s2
	)

Determines all possible basis pairs for an edge given the two SewSegments involved.

References hasher_settings_, pdb_segments_, and segment_vector_.

HasherSettings protocols::sewing::hashing::AlignmentGenerator::hasher_settings

(

)

const

References hasher_settings_.

Referenced by hasher_settings().

void protocols::sewing::hashing::AlignmentGenerator::hasher_settings

(

HasherSettings &

hs

)

References hasher_settings(), and hasher_settings_.

std::map< core::Size, data_storage::SmartSegmentOP > & protocols::sewing::hashing::AlignmentGenerator::pdb_segments

(

)

References pdb_segments_.

void protocols::sewing::hashing::AlignmentGenerator::pdb_segments

(

std::map< core::Size, data_storage::SmartSegmentOP > &

pdbsegs

)

References pdb_segments_.

SegmentVectorCOP protocols::sewing::hashing::AlignmentGenerator::segment_vector

(

)

const

References segment_vector_.

void protocols::sewing::hashing::AlignmentGenerator::segment_vector

(

SegmentVectorCOP

segvec

)

References segment_vector_.

Member Data Documentation

HasherSettings protocols::sewing::hashing::AlignmentGenerator::hasher_settings_

private

Referenced by get_all_alignments(), and hasher_settings().

std::map< core::Size, data_storage::SmartSegmentOP > protocols::sewing::hashing::AlignmentGenerator::pdb_segments_

private

Referenced by const_pdb_segments(), get_all_alignments(), and pdb_segments().

SegmentVectorCOP protocols::sewing::hashing::AlignmentGenerator::segment_vector_

private

Referenced by get_all_alignments(), and segment_vector().

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The documentation for this class was generated from the following files:

• src/protocols/sewing/hashing/AlignmentGenerator.hh
• src/protocols/sewing/hashing/AlignmentGenerator.cc