protocols::loops::loops_definers::LoopsDatabaseDefiner Class Reference

#include <LoopsDatabaseDefiner.hh>

Inheritance diagram for protocols::loops::loops_definers::LoopsDatabaseDefiner:

Public Member Functions
	LoopsDatabaseDefiner ()
	~LoopsDatabaseDefiner () override
	LoopsDatabaseDefiner (LoopsDatabaseDefiner const &src)
LoopsDefinerOP	clone () const override
	Create another loops definer of the type matching the most-derived version of the class. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap const &data) override
	Used to parse an xml-like tag to load parameters and properties. More...
SerializedLoopList	apply (core::pose::Pose const &) override
Public Member Functions inherited from protocols::loops::loops_definers::LoopsDefiner
	~LoopsDefiner () override

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
utility::sql_database::sessionOP	db_session_
std::string	database_table_

Detailed Description

@ details given a database table with the following schema, defining a single loop per row

CREATE TABLE loops ( tag TEXT, start INTEGER, stop INTEGER, cut INTEGER, skip_rate REAL, extended BOOLEAN);

return all loops associated with the job distributor input tag Note: you can specify a different table using the 'database_table' field

Note: if you would like to query the database for loops differently, you can either pre-query the table and store it, or extend, subclass, or create a different LoopsDefiner class.

Constructor & Destructor Documentation

protocols::loops::loops_definers::LoopsDatabaseDefiner::LoopsDatabaseDefiner

(

)

protocols::loops::loops_definers::LoopsDatabaseDefiner::~LoopsDatabaseDefiner ( )

overridedefault

protocols::loops::loops_definers::LoopsDatabaseDefiner::LoopsDatabaseDefiner ( LoopsDatabaseDefiner const &  src )

default

Member Function Documentation

SerializedLoopList protocols::loops::loops_definers::LoopsDatabaseDefiner::apply ( core::pose::Pose const &  )

overridevirtual

Implements protocols::loops::loops_definers::LoopsDefiner.

References protocols::jd2::current_input_tag(), protocols::loops::SerializedLoop::cut, database_table_, protocols::pack_daemon::error_message, protocols::loops::SerializedLoop::extended, protocols::loops::SerializedLoop::skip_rate, protocols::loops::SerializedLoop::start, and protocols::loops::SerializedLoop::stop.

std::string protocols::loops::loops_definers::LoopsDatabaseDefiner::class_name ( )

static

Referenced by provide_xml_schema(), and protocols::loops::loops_definers::LoopsDatabaseDefinerCreator::type_name().

LoopsDefinerOP protocols::loops::loops_definers::LoopsDatabaseDefiner::clone ( ) const

overridevirtual

Create another loops definer of the type matching the most-derived version of the class.

Implements protocols::loops::loops_definers::LoopsDefiner.

void protocols::loops::loops_definers::LoopsDatabaseDefiner::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap const &  data  )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Implements protocols::loops::loops_definers::LoopsDefiner.

References database_table_, db_session_, and protocols::rosetta_scripts::parse_database_session().

void protocols::loops::loops_definers::LoopsDatabaseDefiner::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::rosetta_scripts::attributes_for_parse_database_session(), class_name(), and protocols::loops::loops_definers::xsd_type_definition_w_attributes().

Referenced by protocols::loops::loops_definers::LoopsDatabaseDefinerCreator::provide_xml_schema().

Member Data Documentation

std::string protocols::loops::loops_definers::LoopsDatabaseDefiner::database_table_

private

Referenced by apply(), and parse_my_tag().

utility::sql_database::sessionOP protocols::loops::loops_definers::LoopsDatabaseDefiner::db_session_

private

Referenced by parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/loops/loops_definers/LoopsDatabaseDefiner.hh
• src/protocols/loops/loops_definers/LoopsDatabaseDefiner.cc