protocols::evaluation::AlignEvaluator Class Reference

#include <AlignEvaluator.hh>

Inheritance diagram for protocols::evaluation::AlignEvaluator:

Public Member Functions
	AlignEvaluator (core::pose::PoseCOP native_pose, std::string tag="", bool report_aln_components=true, core::sequence::SequenceAlignmentOP aln=nullptr)
	~AlignEvaluator () override
void	apply (core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &ss) const override=0
	evaluate pose and store values in Silent_Struct More...
core::Real	apply (core::pose::Pose &) const override
	outdated method - don't use! More...
core::sequence::SequenceAlignmentOP	get_alignment (core::pose::Pose const &pose) const
void	report_aln_components (bool const setting)
bool	report_aln_components () const
std::string	tag () const
core::pose::PoseCOP	native_pose () const
Public Member Functions inherited from protocols::evaluation::SingleValuePoseEvaluator< core::Real >
	SingleValuePoseEvaluator (std::string const &name="UNSPECIFIED_SingleValuePoseEvaluator")
void	apply (core::pose::Pose &, std::string tag, core::io::silent::SilentStruct &pss) const override
	evaluate pose and store values in Silent_Struct why is this specific to a specific type of SilentStruct? that seems needlessly pointless and overly constraining. More...
bool	applicable (core::pose::Pose const &) const override
core::Size	size () const override
std::string	name (core::Size) const override
Public Member Functions inherited from protocols::evaluation::PoseEvaluator
	PoseEvaluator ()
	~PoseEvaluator () override=default
virtual void	apply (core::io::silent::SilentStruct &pss) const
	direct application to SilentStruct... default implementation makes pose and calls "apply", you can overload if you don't need the pose-step More...

Private Attributes
core::pose::PoseCOP	native_pose_
std::string	tag_
bool	report_aln_components_
core::sequence::SequenceAlignmentOP	aln_

Constructor & Destructor Documentation

protocols::evaluation::AlignEvaluator::AlignEvaluator	(	core::pose::PoseCOP	native_pose,
		std::string	tag = "",
		bool	report_aln_components = true,
		core::sequence::SequenceAlignmentOP	aln = nullptr
	)

protocols::evaluation::AlignEvaluator::~AlignEvaluator ( )

overridedefault

Member Function Documentation

void protocols::evaluation::AlignEvaluator::apply ( core::pose::Pose &  , std::string  tag, core::io::silent::SilentStruct &  pss  ) const

overridepure virtual

evaluate pose and store values in Silent_Struct

Implements protocols::evaluation::PoseEvaluator.

Implemented in protocols::comparative_modeling::Align_RmsdEvaluator, and protocols::comparative_modeling::Align_RotamerEvaluator.

core::Real protocols::evaluation::AlignEvaluator::apply ( core::pose::Pose &  ) const

inlineoverridevirtual

outdated method - don't use!

Implements protocols::evaluation::SingleValuePoseEvaluator< core::Real >.

core::sequence::SequenceAlignmentOP protocols::evaluation::AlignEvaluator::get_alignment

(

core::pose::Pose const &

pose

)

const

References core::sequence::align_naive(), aln_, native_pose_, core::pose::Pose::sequence(), and protocols::evaluation::tr().

Referenced by protocols::comparative_modeling::Align_RotamerEvaluator::apply(), and protocols::comparative_modeling::Align_RmsdEvaluator::apply().

core::pose::PoseCOP protocols::evaluation::AlignEvaluator::native_pose

(

)

const

References native_pose_.

Referenced by protocols::comparative_modeling::Align_RotamerEvaluator::apply(), and protocols::comparative_modeling::Align_RmsdEvaluator::apply().

void protocols::evaluation::AlignEvaluator::report_aln_components

(

bool const

setting

)

References report_aln_components_.

bool protocols::evaluation::AlignEvaluator::report_aln_components

(

)

const

References report_aln_components_.

Referenced by protocols::comparative_modeling::Align_RmsdEvaluator::apply().

std::string protocols::evaluation::AlignEvaluator::tag

(

)

const

References tag_.

Referenced by protocols::comparative_modeling::Align_RotamerEvaluator::apply(), and protocols::comparative_modeling::Align_RmsdEvaluator::apply().

Member Data Documentation

core::sequence::SequenceAlignmentOP protocols::evaluation::AlignEvaluator::aln_

private

Referenced by get_alignment().

core::pose::PoseCOP protocols::evaluation::AlignEvaluator::native_pose_

private

Referenced by get_alignment(), and native_pose().

bool protocols::evaluation::AlignEvaluator::report_aln_components_

private

Referenced by report_aln_components().

std::string protocols::evaluation::AlignEvaluator::tag_

private

Referenced by tag().

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The documentation for this class was generated from the following files:

• src/protocols/evaluation/AlignEvaluator.hh
• src/protocols/evaluation/AlignEvaluator.cc