Rosetta  2021.16
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core::sequence::SimpleScoringScheme Member List

This is the complete list of members for core::sequence::SimpleScoringScheme, including all inherited members.

clone() const overridecore::sequence::SimpleScoringSchemeinlinevirtual
gap_extend() const core::sequence::ScoringSchemevirtual
gap_extend(Real const gap_extend)core::sequence::ScoringScheme
gap_open() const core::sequence::ScoringSchemevirtual
gap_open(Real const gap_open)core::sequence::ScoringScheme
is_good(Real const &num)core::sequence::ScoringScheme
match_score() const core::sequence::SimpleScoringScheme
match_score_core::sequence::SimpleScoringSchemeprivate
mismatch_score() const core::sequence::SimpleScoringScheme
mismatch_score_core::sequence::SimpleScoringSchemeprivate
read_data(utility::io::izstream &)core::sequence::ScoringSchemevirtual
read_from_file(utility::file::FileName const &fn) overridecore::sequence::SimpleScoringSchemevirtual
score(SequenceOP seq1, SequenceOP seq2, core::Size pos1, core::Size pos2) overridecore::sequence::SimpleScoringScheme
core::sequence::ScoringScheme::score(SequenceOP seq1, SequenceOP seq2, Size pos1, Size pos2)=0core::sequence::ScoringSchemepure virtual
ScoringScheme()core::sequence::ScoringScheme
SimpleScoringScheme(Real match_score=4, Real mismatch_score=1, Real gap_open_in=-4, Real gap_extend_in=-1)core::sequence::SimpleScoringSchemeinline
type() const core::sequence::ScoringScheme
type(std::string new_type)core::sequence::ScoringScheme
unimplemented_method_error(std::string const &method_name) const core::sequence::ScoringScheme
~ScoringScheme() overridecore::sequence::ScoringScheme
~SimpleScoringScheme() override=defaultcore::sequence::SimpleScoringScheme
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