| add_full_assignment(core::Size res_ids[]) | protocols::noesy_assign::CrossPeak | virtual |
| ambiguous() const | protocols::noesy_assign::CrossPeak | inline |
| assign_spin(core::Size spin_id) | protocols::noesy_assign::CrossPeak | virtual |
| assign_spin(core::Size spin_id, core::Size res_ids[]) | protocols::noesy_assign::CrossPeak | virtual |
| assigned() const | protocols::noesy_assign::CrossPeak | inline |
| assignments() const | protocols::noesy_assign::CrossPeak | inline |
| assignments_ | protocols::noesy_assign::CrossPeak | private |
| BAD_LOW_PROB enum value | protocols::noesy_assign::CrossPeak | |
| begin() const | protocols::noesy_assign::CrossPeak | inline |
| begin() | protocols::noesy_assign::CrossPeak | inline |
| calibrate(PeakCalibrator const &, CalibrationTypeCumulator &calibration_types) | protocols::noesy_assign::CrossPeak | |
| const_iterator typedef | protocols::noesy_assign::CrossPeak | |
| create_fa_and_cen_constraint(core::scoring::constraints::ConstraintOP &fa_cst, core::scoring::constraints::ConstraintOP &cen_cst, core::pose::Pose const &pose, core::pose::Pose const ¢roid_pose, core::Size normalization, core::Real padding=0.0, bool fa_only=false) const | protocols::noesy_assign::CrossPeak | |
| CrossPeak(Spin const &, Spin const &, core::Real strength) | protocols::noesy_assign::CrossPeak | |
| CrossPeak() | protocols::noesy_assign::CrossPeak | |
| cumulative_peak_volume() const | protocols::noesy_assign::CrossPeak | inline |
| cumulative_peak_volume_ | protocols::noesy_assign::CrossPeak | private |
| dimension() const | protocols::noesy_assign::CrossPeak | inline |
| distance_bound() const | protocols::noesy_assign::CrossPeak | inline |
| distance_bound_ | protocols::noesy_assign::CrossPeak | private |
| EL_DISTVIOL enum value | protocols::noesy_assign::CrossPeak | |
| EL_MAXASSIGN enum value | protocols::noesy_assign::CrossPeak | |
| EL_MINPEAKVOL enum value | protocols::noesy_assign::CrossPeak | |
| EL_NETWORK enum value | protocols::noesy_assign::CrossPeak | |
| eliminated(bool recompute=false, bool do_not_compute=false) const | protocols::noesy_assign::CrossPeak | |
| eliminated_ | protocols::noesy_assign::CrossPeak | mutableprivate |
| eliminated_due_to_dist_violations_ | protocols::noesy_assign::CrossPeak | private |
| elimination_candidate_ | protocols::noesy_assign::CrossPeak | private |
| elimination_comment_ | protocols::noesy_assign::CrossPeak | private |
| elimination_reason() const | protocols::noesy_assign::CrossPeak | |
| EliminationReason enum name | protocols::noesy_assign::CrossPeak | |
| empty_clone() | protocols::noesy_assign::CrossPeak | inlinevirtual |
| end() const | protocols::noesy_assign::CrossPeak | inline |
| end() | protocols::noesy_assign::CrossPeak | inline |
| exp_hash() const | protocols::noesy_assign::CrossPeak | inline |
| filename() const | protocols::noesy_assign::CrossPeak | inline |
| find_assignments() | protocols::noesy_assign::CrossPeak | virtual |
| fold_resonance(core::Real freq, core::Size i) | protocols::noesy_assign::CrossPeak | inline |
| folder(core::Size i) | protocols::noesy_assign::CrossPeak | inline |
| has_label(core::Size) const | protocols::noesy_assign::CrossPeak | inlinevirtual |
| has_proton(core::Size) const | protocols::noesy_assign::CrossPeak | |
| HI_AMBIG enum value | protocols::noesy_assign::CrossPeak | |
| HI_NEAR_UNAMBIG enum value | protocols::noesy_assign::CrossPeak | |
| HI_UNAMBIG enum value | protocols::noesy_assign::CrossPeak | |
| info(core::Size i) const | protocols::noesy_assign::CrossPeak | inline |
| info1_ | protocols::noesy_assign::CrossPeak | private |
| info2_ | protocols::noesy_assign::CrossPeak | private |
| is4D() const | protocols::noesy_assign::CrossPeak | inline |
| is_elimination_candidate() | protocols::noesy_assign::CrossPeak | inline |
| iterator typedef | protocols::noesy_assign::CrossPeak | |
| label(core::Size) | protocols::noesy_assign::CrossPeak | inlinevirtual |
| label(core::Size) const | protocols::noesy_assign::CrossPeak | inlinevirtual |
| MAX_CLASS enum value | protocols::noesy_assign::CrossPeak | |
| max_volume_contribution() const | protocols::noesy_assign::CrossPeak | |
| MED_AMBIG enum value | protocols::noesy_assign::CrossPeak | |
| min_seq_separation_residue_assignment(core::Real volume_threshold) const | protocols::noesy_assign::CrossPeak | |
| n_assigned() const | protocols::noesy_assign::CrossPeak | inline |
| n_Vmin_assignments() | protocols::noesy_assign::CrossPeak | |
| NOT_ELIMINATED enum value | protocols::noesy_assign::CrossPeak | |
| nudge_distance_bound(core::Real offset) | protocols::noesy_assign::CrossPeak | |
| peak_id() const | protocols::noesy_assign::CrossPeak | inline |
| peak_id_ | protocols::noesy_assign::CrossPeak | private |
| PeakAssignments typedef | protocols::noesy_assign::CrossPeak | |
| print_peak_info(std::ostream &) const | protocols::noesy_assign::CrossPeak | |
| probability() const | protocols::noesy_assign::CrossPeak | |
| proton(core::Size i) const | protocols::noesy_assign::CrossPeak | inline |
| proton(core::Size i) | protocols::noesy_assign::CrossPeak | inline |
| proton1_ | protocols::noesy_assign::CrossPeak | private |
| proton2_ | protocols::noesy_assign::CrossPeak | private |
| quality_class() const | protocols::noesy_assign::CrossPeak | |
| quality_class_str() const | protocols::noesy_assign::CrossPeak | |
| QualityClass enum name | protocols::noesy_assign::CrossPeak | |
| resonances() const | protocols::noesy_assign::CrossPeak | inline |
| resonances_ | protocols::noesy_assign::CrossPeak | private |
| same_peak(CrossPeak const &other) const | protocols::noesy_assign::CrossPeak | inline |
| set_cumulative_peak_volume(core::Real setting) | protocols::noesy_assign::CrossPeak | inline |
| set_eliminated_due_to_dist_violations(bool setting) | protocols::noesy_assign::CrossPeak | inline |
| set_elimination_candidate(bool setting=true) | protocols::noesy_assign::CrossPeak | inline |
| set_elimination_comment(std::string const &str) | protocols::noesy_assign::CrossPeak | inline |
| set_info(core::Size i, CrossPeakInfoCOP info) | protocols::noesy_assign::CrossPeak | inline |
| set_peak_id(core::Size val) | protocols::noesy_assign::CrossPeak | inline |
| set_resonances(ResonanceListOP res_in) | protocols::noesy_assign::CrossPeak | inline |
| set_volume(core::Real val) | protocols::noesy_assign::CrossPeak | inline |
| smallest_native_violation() const | protocols::noesy_assign::CrossPeak | |
| spin(core::Size i) const | protocols::noesy_assign::CrossPeak | inline |
| spin(core::Size i) | protocols::noesy_assign::CrossPeak | inline |
| tolerance(core::Size d) | protocols::noesy_assign::CrossPeak | inline |
| UNAMBIG_MED_PROB enum value | protocols::noesy_assign::CrossPeak | |
| UNFOLDED_ | protocols::noesy_assign::CrossPeak | private |
| volume() const | protocols::noesy_assign::CrossPeak | inline |
| volume_ | protocols::noesy_assign::CrossPeak | private |
| ~CrossPeak() override | protocols::noesy_assign::CrossPeak | |