core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes Class Reference

Prohibit the base ResidueTypes provided by name from the palette of ResidueTypes. More...

#include <TaskOperations.hh>

Inheritance diagram for core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes:

Public Types
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	ProhibitSpecifiedBaseResidueTypes ()
	BEGIN ProhibitSpecifiedBaseResidueTypes. More...
	ProhibitSpecifiedBaseResidueTypes (ProhibitSpecifiedBaseResidueTypes const &object_to_copy)
	ProhibitSpecifiedBaseResidueTypes (utility::vector1< std::string > const &base_types)
	ProhibitSpecifiedBaseResidueTypes (utility::vector1< std::string > const &base_types, core::select::residue_selector::ResidueSelectorCOP selector)
	~ProhibitSpecifiedBaseResidueTypes () override=default
TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (pose::Pose const &pose, PackerTask &task) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	parse_tag (TagCOP tag, DataMap &map) override
	Used to parse an xml-like tag to load parameters and properties. More...
void	set_base_types (utility::vector1< std::string > const &base_types)
utility::vector1< std::string > const &	base_types () const
void	set_selector (core::select::residue_selector::ResidueSelectorCOP selector)
core::select::residue_selector::ResidueSelectorCOP	selector () const
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	keyname ()
static utility::tag::AttributeList	xml_schema_attributes ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
utility::vector1< std::string >	base_types_
core::select::residue_selector::ResidueSelectorCOP	selector_

Detailed Description

Prohibit the base ResidueTypes provided by name from the palette of ResidueTypes.

Author

Labonte JWLab.nosp@m.onte.nosp@m.@jhu..nosp@m.edu

Member Typedef Documentation

typedef TaskOperation core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::parent

Constructor & Destructor Documentation

core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::ProhibitSpecifiedBaseResidueTypes

(

)

BEGIN ProhibitSpecifiedBaseResidueTypes.

core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::ProhibitSpecifiedBaseResidueTypes

(

ProhibitSpecifiedBaseResidueTypes const &

object_to_copy

)

References base_types_, and selector_.

core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::ProhibitSpecifiedBaseResidueTypes

(

utility::vector1< std::string > const &

base_types

)

core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::ProhibitSpecifiedBaseResidueTypes	(	utility::vector1< std::string > const &	base_types,
		core::select::residue_selector::ResidueSelectorCOP	selector
	)

core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::~ProhibitSpecifiedBaseResidueTypes ( )

overridedefault

Member Function Documentation

void core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::apply ( pose::Pose const &  , PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References base_types_, core::pack::task::ResidueLevelTask::disable_restypes(), core::pack::task::PackerTask::nonconst_residue_task(), selector_, and core::pose::Pose::size().

utility::vector1< std::string > const& core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::base_types ( ) const

inline

References base_types_.

Referenced by parse_tag(), and set_base_types().

TaskOperationOP core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

std::string core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::keyname ( )

static

Referenced by core::pack::task::operation::ProhibitSpecifiedBaseResidueTypesCreator::keyname(), and provide_xml_schema().

void core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References base_types(), base_types_, protocols::pack_daemon::error_message, selector_, and set_selector().

void core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), core::pack::task::operation::task_op_schema_w_attributes(), and xml_schema_attributes().

Referenced by core::pack::task::operation::ProhibitSpecifiedBaseResidueTypesCreator::provide_xml_schema().

core::select::residue_selector::ResidueSelectorCOP core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::selector ( ) const

inline

References selector_.

void core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::set_base_types ( utility::vector1< std::string > const &  base_types )

inline

References base_types(), and base_types_.

void core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::set_selector

(

core::select::residue_selector::ResidueSelectorCOP

selector

)

References selector_.

Referenced by parse_tag().

utility::tag::AttributeList core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::xml_schema_attributes ( )

static

Referenced by provide_xml_schema().

Member Data Documentation

utility::vector1< std::string > core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::base_types_

private

Referenced by apply(), base_types(), parse_tag(), ProhibitSpecifiedBaseResidueTypes(), and set_base_types().

core::select::residue_selector::ResidueSelectorCOP core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::selector_

private

Referenced by apply(), parse_tag(), ProhibitSpecifiedBaseResidueTypes(), selector(), and set_selector().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/TaskOperations.hh
• src/core/pack/task/operation/TaskOperations.cc