Rosetta  2021.16
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core::fragment::rna::FullAtomRNA_Fragments Member List

This is the complete list of members for core::fragment::rna::FullAtomRNA_Fragments, including all inherited members.

apply_best_fragment(core::scoring::ScoreFunctionOP sfxn, core::pose::Pose &pose, core::Size const position, core::Size const size, core::Size const type, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, core::Size const symm_hack_arity, core::Size const exhaustive) const overridecore::fragment::rna::FullAtomRNA_Fragmentsvirtual
apply_random_fragment(core::pose::Pose &pose, core::Size const position, core::Size const size, core::Size const type, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, core::Size const symm_hack_arity) const overridecore::fragment::rna::FullAtomRNA_Fragmentsvirtual
fragment_library_pointer_mapcore::fragment::rna::FullAtomRNA_Fragmentsmutableprivate
FullAtomRNA_Fragments(std::string const &filename)core::fragment::rna::FullAtomRNA_Fragments
get_fragment_library_pointer(std::string const &RNA_string, std::string const &RNA_secstruct_string, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, utility::vector1< SYN_ANTI_RESTRICTION > const &restriction=utility::vector1< SYN_ANTI_RESTRICTION >(), Size const type=MATCH_YR) const overridecore::fragment::rna::FullAtomRNA_Fragmentsvirtual
insert_fragment(core::pose::Pose &pose, Size const position, TorsionSet const &torsion_set, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map) const overridecore::fragment::rna::FullAtomRNA_Fragmentsvirtual
is_fullatom() overridecore::fragment::rna::FullAtomRNA_Fragmentsvirtual
name(core::Size const &i) const core::fragment::rna::FullAtomRNA_Fragmentsinline
non_main_chain_sugar_coords(core::Size const &i, core::Size const &j, core::Size const &k) const core::fragment::rna::FullAtomRNA_Fragmentsinline
non_main_chain_sugar_coords_defined() const core::fragment::rna::FullAtomRNA_Fragmentsinline
pick_fragment_library(FragmentLibraryPointerKey const &key) const core::fragment::rna::FullAtomRNA_Fragmentsprivate
pick_random_fragment(TorsionSet &torsion_set, std::string const &RNA_string, std::string const &RNA_secstruct_string, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, utility::vector1< SYN_ANTI_RESTRICTION > const &restriction=utility::vector1< SYN_ANTI_RESTRICTION >(), core::Size const type=MATCH_YR) const core::fragment::rna::FullAtomRNA_Fragmentsprivate
pick_random_fragment(TorsionSet &torsion_set, core::pose::Pose &pose, core::Size const position, core::Size const size, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, core::Size const type=MATCH_YR) const core::fragment::rna::FullAtomRNA_Fragmentsprivate
read_vall_torsions(std::string const &filename)core::fragment::rna::FullAtomRNA_Fragmentsprivate
RNA_Fragments()core::fragment::rna::RNA_Fragments
secstruct(core::Size const &i) const core::fragment::rna::FullAtomRNA_Fragmentsinline
torsions(core::Size const &i, core::Size const &j) const core::fragment::rna::FullAtomRNA_Fragmentsinline
vall_edge_is_base_pairing_core::fragment::rna::FullAtomRNA_Fragmentsprivate
vall_is_chainbreak_core::fragment::rna::FullAtomRNA_Fragmentsprivate
vall_makes_canonical_base_pair_core::fragment::rna::FullAtomRNA_Fragmentsprivate
vall_name_core::fragment::rna::FullAtomRNA_Fragmentsprivate
vall_non_main_chain_sugar_coords_core::fragment::rna::FullAtomRNA_Fragmentsprivate
vall_non_main_chain_sugar_coords_defined_core::fragment::rna::FullAtomRNA_Fragmentsprivate
vall_secstruct_core::fragment::rna::FullAtomRNA_Fragmentsprivate
vall_sequence_core::fragment::rna::FullAtomRNA_Fragmentsprivate
vall_size_core::fragment::rna::FullAtomRNA_Fragmentsprivate
vall_torsions_core::fragment::rna::FullAtomRNA_Fragmentsprivate
~FullAtomRNA_Fragments() overridecore::fragment::rna::FullAtomRNA_Fragmentsinline
~RNA_Fragments() overridecore::fragment::rna::RNA_Fragments