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Rosetta
2021.16
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This is the complete list of members for core::fragment::rna::FullAtomRNA_Fragments, including all inherited members.
| apply_best_fragment(core::scoring::ScoreFunctionOP sfxn, core::pose::Pose &pose, core::Size const position, core::Size const size, core::Size const type, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, core::Size const symm_hack_arity, core::Size const exhaustive) const override | core::fragment::rna::FullAtomRNA_Fragments | virtual |
| apply_random_fragment(core::pose::Pose &pose, core::Size const position, core::Size const size, core::Size const type, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, core::Size const symm_hack_arity) const override | core::fragment::rna::FullAtomRNA_Fragments | virtual |
| fragment_library_pointer_map | core::fragment::rna::FullAtomRNA_Fragments | mutableprivate |
| FullAtomRNA_Fragments(std::string const &filename) | core::fragment::rna::FullAtomRNA_Fragments | |
| get_fragment_library_pointer(std::string const &RNA_string, std::string const &RNA_secstruct_string, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, utility::vector1< SYN_ANTI_RESTRICTION > const &restriction=utility::vector1< SYN_ANTI_RESTRICTION >(), Size const type=MATCH_YR) const override | core::fragment::rna::FullAtomRNA_Fragments | virtual |
| insert_fragment(core::pose::Pose &pose, Size const position, TorsionSet const &torsion_set, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map) const override | core::fragment::rna::FullAtomRNA_Fragments | virtual |
| is_fullatom() override | core::fragment::rna::FullAtomRNA_Fragments | virtual |
| name(core::Size const &i) const | core::fragment::rna::FullAtomRNA_Fragments | inline |
| non_main_chain_sugar_coords(core::Size const &i, core::Size const &j, core::Size const &k) const | core::fragment::rna::FullAtomRNA_Fragments | inline |
| non_main_chain_sugar_coords_defined() const | core::fragment::rna::FullAtomRNA_Fragments | inline |
| pick_fragment_library(FragmentLibraryPointerKey const &key) const | core::fragment::rna::FullAtomRNA_Fragments | private |
| pick_random_fragment(TorsionSet &torsion_set, std::string const &RNA_string, std::string const &RNA_secstruct_string, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, utility::vector1< SYN_ANTI_RESTRICTION > const &restriction=utility::vector1< SYN_ANTI_RESTRICTION >(), core::Size const type=MATCH_YR) const | core::fragment::rna::FullAtomRNA_Fragments | private |
| pick_random_fragment(TorsionSet &torsion_set, core::pose::Pose &pose, core::Size const position, core::Size const size, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, core::Size const type=MATCH_YR) const | core::fragment::rna::FullAtomRNA_Fragments | private |
| read_vall_torsions(std::string const &filename) | core::fragment::rna::FullAtomRNA_Fragments | private |
| RNA_Fragments() | core::fragment::rna::RNA_Fragments | |
| secstruct(core::Size const &i) const | core::fragment::rna::FullAtomRNA_Fragments | inline |
| torsions(core::Size const &i, core::Size const &j) const | core::fragment::rna::FullAtomRNA_Fragments | inline |
| vall_edge_is_base_pairing_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| vall_is_chainbreak_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| vall_makes_canonical_base_pair_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| vall_name_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| vall_non_main_chain_sugar_coords_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| vall_non_main_chain_sugar_coords_defined_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| vall_secstruct_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| vall_sequence_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| vall_size_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| vall_torsions_ | core::fragment::rna::FullAtomRNA_Fragments | private |
| ~FullAtomRNA_Fragments() override | core::fragment::rna::FullAtomRNA_Fragments | inline |
| ~RNA_Fragments() override | core::fragment::rna::RNA_Fragments |
1.8.7