util.cc File Reference

#include <protocols/stepwise/modeler/protein/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameList.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/types.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/util.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/util.hh>
#include <core/scoring/rms_util.hh>
#include <numeric/angle.functions.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/conversions.hh>
#include <ObjexxFCL/format.hh>
#include <string>
#include <utility/vector1.hh>
#include <utility/tools/make_vector1.hh>
#include <utility/numbers.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::modeler
	protocols::stepwise::modeler::protein

Functions
void	protocols::stepwise::modeler::protein::setup_protein_backbone_atom_id_map (core::pose::Pose const &pose_1, core::pose::Pose const &pose_2, core::Size const base_res, core::Size const base_res2, core::id::AtomID_Map< core::id::AtomID > &atom_ID_map)
void	protocols::stepwise::modeler::protein::figure_out_protein_modeling_info (pose::Pose const &pose, core::Size const moving_res, utility::vector1< core::Size > &moving_res_list)
utility::vector1< core::Size >	protocols::stepwise::modeler::protein::get_bridge_res (pose::Pose const &pose, utility::vector1< core::Size > const &moving_res_list)
utility::vector1< core::Size >	protocols::stepwise::modeler::protein::just_protein (utility::vector1< core::Size > const &res_list, pose::Pose const &pose)
bool	protocols::stepwise::modeler::protein::contains_protein (core::pose::Pose const &pose, utility::vector1< core::Size > const &res_list)