| add_constraint(ConstraintCOP cst) | core::scoring::constraints::ConstraintSet | |
| add_constraints(ConstraintCOPs cst_list) | core::scoring::constraints::ConstraintSet | |
| add_constraints(ConstraintSetCOP const cst_set) | core::scoring::constraints::ConstraintSet | |
| add_dof_constraint(DOF_ID const &id, func::FuncOP func, ScoreType const &t=core::scoring::dof_constraint) | core::scoring::constraints::ConstraintSet | |
| add_residue_pair_constraint(Size const pos1, Size const pos2, ConstraintCOP cst) | core::scoring::constraints::ConstraintSet | private |
| add_sequence_constraint(aa_composition_energy::SequenceConstraintCOP cst) | core::scoring::constraints::ConstraintSet | private |
| AtomID typedef | core::scoring::constraints::ConstraintSet | |
| attach_to_conformation(core::conformation::ConformationCAP conformation) | core::scoring::constraints::ConstraintSet | |
| clear() | core::scoring::constraints::ConstraintSet | |
| clear_sequence_constraints() | core::scoring::constraints::ConstraintSet | |
| clone() const | core::scoring::constraints::ConstraintSet | virtual |
| conformation_pt_ | core::scoring::constraints::ConstraintSet | private |
| ConstraintSet() | core::scoring::constraints::ConstraintSet | |
| ConstraintSet(ConstraintSet const &other) | core::scoring::constraints::ConstraintSet | |
| ConstraintSet(ConstraintSet const &other, core::Size start_residue, core::Size end_residue) | core::scoring::constraints::ConstraintSet | |
| deep_copy(ConstraintSet const &other) | core::scoring::constraints::ConstraintSet | protected |
| deprecated_eval_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const | core::scoring::constraints::ConstraintSet | virtual |
| deprecated_eval_atom_derivative_for_residue_pairs(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const | core::scoring::constraints::ConstraintSet | protectedvirtual |
| detach_from_conformation() | core::scoring::constraints::ConstraintSet | |
| detached_clone() const | core::scoring::constraints::ConstraintSet | virtual |
| detached_copy(ConstraintSet const &src) | core::scoring::constraints::ConstraintSet | virtual |
| dof_constraints_ | core::scoring::constraints::ConstraintSet | private |
| DOF_ID typedef | core::scoring::constraints::ConstraintSet | |
| empty_rsdcst_ | core::scoring::constraints::ConstraintSet | private |
| eval_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::constraints::ConstraintSet | virtual |
| eval_intrares_energy(conformation::Residue const &rsd, EnergyMap &emap) const | core::scoring::constraints::ConstraintSet | |
| eval_multibody_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const | core::scoring::constraints::ConstraintSet | virtual |
| eval_non_residue_pair_energy(Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::constraints::ConstraintSet | virtual |
| get_all_constraints() const | core::scoring::constraints::ConstraintSet | |
| has_constraints() const | core::scoring::constraints::ConstraintSet | inline |
| has_dof_constraints() const | core::scoring::constraints::ConstraintSet | inline |
| has_intra_residue_constraints() const | core::scoring::constraints::ConstraintSet | inline |
| has_non_residue_pair_constraints() const | core::scoring::constraints::ConstraintSet | inline |
| has_residue_pair_constraints() const | core::scoring::constraints::ConstraintSet | inline |
| intra_residue_constraints_ | core::scoring::constraints::ConstraintSet | private |
| is_empty() const | core::scoring::constraints::ConstraintSet | |
| mark_revision_id_expired() | core::scoring::constraints::ConstraintSet | protected |
| n_sequence_constraints() const | core::scoring::constraints::ConstraintSet | |
| non_residue_pair_constraints() const | core::scoring::constraints::ConstraintSet | inlineprotected |
| non_residue_pair_constraints_ | core::scoring::constraints::ConstraintSet | private |
| on_connection_change(core::conformation::signals::ConnectionEvent const &event) | core::scoring::constraints::ConstraintSet | |
| on_length_change(conformation::signals::LengthEvent const &event) | core::scoring::constraints::ConstraintSet | |
| operator=(ConstraintSet const &rhs) | core::scoring::constraints::ConstraintSet | virtual |
| Pose typedef | core::scoring::constraints::ConstraintSet | |
| remap_residue_positions(id::SequenceMapping const &smap) | core::scoring::constraints::ConstraintSet | |
| remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP smap=nullptr) const | core::scoring::constraints::ConstraintSet | virtual |
| remove_constraint(ConstraintCOP cst, bool object_comparison) | core::scoring::constraints::ConstraintSet | |
| remove_constraints(ConstraintCOPs cst_list, bool object_comparison) | core::scoring::constraints::ConstraintSet | |
| remove_residue_pair_constraint(Size const pos1, Size const pos2, ConstraintCOP cst, bool object_comparison) | core::scoring::constraints::ConstraintSet | private |
| Residue typedef | core::scoring::constraints::ConstraintSet | |
| residue_pair_constraint_exists(int const pos1, int const pos2) const | core::scoring::constraints::ConstraintSet | inlinevirtual |
| residue_pair_constraints() const | core::scoring::constraints::ConstraintSet | protected |
| residue_pair_constraints_ | core::scoring::constraints::ConstraintSet | private |
| residue_pair_constraints_begin(Size resid) const | core::scoring::constraints::ConstraintSet | |
| residue_pair_constraints_end(Size resid) const | core::scoring::constraints::ConstraintSet | |
| residue_pair_constraints_exists(Size const pos) const | core::scoring::constraints::ConstraintSet | inlinevirtual |
| residue_pair_energy(Residue const &rsd1, Residue const &rsd2, Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) const | core::scoring::constraints::ConstraintSet | virtual |
| ResiduePairConstraints typedef | core::scoring::constraints::ConstraintSet | |
| ResiduePairConstraintsIterator typedef | core::scoring::constraints::ConstraintSet | |
| revision_id() const | core::scoring::constraints::ConstraintSet | |
| revision_id_ | core::scoring::constraints::ConstraintSet | mutableprivate |
| revision_id_current_ | core::scoring::constraints::ConstraintSet | mutableprivate |
| same_type_as_me(ConstraintSet const &other, bool recurse=true) const | core::scoring::constraints::ConstraintSet | virtual |
| sequence_constraint(core::Size const index) const | core::scoring::constraints::ConstraintSet | |
| sequence_constraints_ | core::scoring::constraints::ConstraintSet | private |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) const | core::scoring::constraints::ConstraintSet | virtual |
| setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData &res_data_cache) const | core::scoring::constraints::ConstraintSet | virtual |
| setup_for_minimizing_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData const &res1_data_cache, ResSingleMinimizationData const &res2_data_cache, ResPairMinimizationData &respair_data_cache) const | core::scoring::constraints::ConstraintSet | virtual |
| setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) const | core::scoring::constraints::ConstraintSet | virtual |
| shallow_copy(ConstraintSet const &other, Size start, Size end) | core::scoring::constraints::ConstraintSet | protected |
| show(std::ostream &out) const | core::scoring::constraints::ConstraintSet | virtual |
| show_definition(std::ostream &out, core::pose::Pose const &) const | core::scoring::constraints::ConstraintSet | virtual |
| show_numbers(std::ostream &out) const | core::scoring::constraints::ConstraintSet | virtual |
| show_violations(std::ostream &out, pose::Pose &, Size verbose_level, Real threshold=1) const | core::scoring::constraints::ConstraintSet | virtual |
| steal_def_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP smap=nullptr) const | core::scoring::constraints::ConstraintSet | virtual |
| total_residue_ | core::scoring::constraints::ConstraintSet | private |
| ~ConstraintSet() override | core::scoring::constraints::ConstraintSet | |
1.8.7