| add_pose(core::pose::PoseCOP pose) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| add_rotamer_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
| add_rotamer_constraints(core::pose::Pose &pose, core::Size seqnum, core::conformation::ResidueOP cur_rot) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| add_rotamer_to_rotamer_set(core::pose::Pose const &pose, core::pack::rotamer_set::RotamerSet &rotamer_set, core::conformation::ResidueOP cur_rot) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| alter_rotamer_set(core::pose::Pose const &pose, core::scoring::ScoreFunction const &, core::pack::task::PackerTask const &, utility::graph::GraphCOP, core::pack::rotamer_set::RotamerSet &rotamer_set) override | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | virtual |
| alter_rotamer_set_from_db(core::pose::Pose const &pose, core::pack::task::PackerTask const &ptask, core::pack::rotamer_set::RotamerSet &rotamer_set) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| alter_rotamer_set_from_pdb(core::pose::Pose const &pose, core::pack::task::PackerTask const &ptask, core::pack::rotamer_set::RotamerSet &rotamer_set) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| ccd_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
| clone() const override | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | virtual |
| copy_rotamer_matrix(rot_matrix const &rm) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| db_file_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
| debug_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
| fill_rotamer_matrix_from_db_file() | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| GraphCOP typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| increase_packer_residue_radius(pose::Pose const &pose, task::PackerTaskCOP the_task, core::Size residue_in) const | core::pack::rotamer_set::RotamerSetOperation | virtual |
| initialize_from_command_line() | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| is_residue_allowed(core::chemical::ResidueType const &restype, core::pack::task::ResidueLevelTask const &rtask) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| PackerTask typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| PackerTaskCOP typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| Pose typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| poses_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
| Real typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| resi_vec_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
| ROT2res(ROT rot, core::pose::Pose const &pose) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| Rotamers typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| RotamerSet typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| RotamerSetOperation() | core::pack::rotamer_set::RotamerSetOperation | |
| RotamerSetOperationOP typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| SampleAtAlignedpositions_ | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | private |
| SampleRotamersFromPDB_RotamerSetOperation() | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| SampleRotamersFromPDB_RotamerSetOperation(bool add_rot, utility::vector1< core::Size > SampleAtAlignedpositions, bool d, bool ccd, std::string file_name) | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| ScoreFunction typedef | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |
| ~RotamerSetOperation() override | core::pack::rotamer_set::RotamerSetOperation | |
| ~SampleRotamersFromPDB_RotamerSetOperation() override | protocols::splice::SampleRotamersFromPDB_RotamerSetOperation | |