#include <MPI_Refine_Emperor.hh>

Inheritance diagram for protocols::mpi_refinement::MPI_Refine_Emperor:

Public Member Functions
	MPI_Refine_Emperor ()

	~MPI_Refine_Emperor () override=default

void	set_defaults ()

void	go () override

Public Member Functions inherited from protocols::mpi_refinement::MPI_Refinement
	MPI_Refinement (char machine_letter)

void	set_defaults ()

	~MPI_Refinement () override=default

Public Member Functions inherited from protocols::wum::MPI_WorkUnitManager
	MPI_WorkUnitManager (char machine_letter)

	~MPI_WorkUnitManager () override=default

Public Member Functions inherited from protocols::wum::WorkUnitManager
	WorkUnitManager ()

	~WorkUnitManager () override=default

void	register_work_units (const protocols::wum::WorkUnitList &work_unit_list)

WorkUnitQueue &	outbound ()

WorkUnitQueue &	inbound ()

const WorkUnitQueue &	outbound () const

const WorkUnitQueue &	inbound () const

Protected Member Functions
void	init () override

void	process_inbound_wus () override

void	process_outbound_wus () override

bool	add_structures_to_library (protocols::wum::SilentStructStore &new_structs, std::string add_algorithm="") override

Protected Member Functions inherited from protocols::mpi_refinement::MPI_Refinement
void	load_structures_from_cmdline_into_library (protocols::wum::SilentStructStore &library)

void	save_state (std::string prefix="default")

void	save_state_auto ()

void	load_state (std::string prefix="default")

void	print_stats () override
	Print a line with general run statistics, now. More...

void	print_summary (std::string const prefix="SUMM ")

void	print_library (protocols::wum::SilentStructStore &library, std::string const prefix="LIB ")

virtual bool	add_structure_to_library (core::io::silent::SilentStructOP pss, std::string add_algorithm="")

bool	add_structure_to_library_direct (core::io::silent::SilentStruct &pss)

bool	add_structure_to_library_add_n_replace (core::io::silent::SilentStruct &pss)

bool	add_structure_to_library_single_replace (core::io::silent::SilentStruct &pss)

void	update_library_NSGAII (protocols::wum::SilentStructStore &new_structs)

void	setup_multi_objective ()

void	send_sortedpick_library_structs (core::Size dest_rank, core::Size nsend, std::string const scorename, bool const weighted, bool const inverse=false, core::Real const kT=0.2)

void	send_random_library_structs (core::Size dest_rank, core::Size nsend)

void	send_random_library_struct (core::Size dest_rank, core::Size ssid) const

void	limit_library ()

void	shave_library (protocols::wum::SilentStructStore &new_structs, std::string const scorename, core::Real const frac) const

void	dump_structures (const protocols::wum::SilentStructStore &new_structs, bool score_only=true, std::string const prefix="") const

void	set_ident_string (std::string new_ident)

void	report_time () const

const std::string &	mpi_resume ()

core::Size &	totaltime_loophash ()

protocols::wum::SilentStructStore &	library_central ()

protocols::wum::SilentStructStore &	library_ref ()

const std::string &	mpi_feedback ()

void	set_mpi_feedback (const std::string &mpi_feedback)

core::Size	max_lib_size ()

core::Size	max_ref_lib_size ()

void	set_max_lib_size (core::Size max_lib_size)

void	set_max_ref_lib_size (core::Size max_ref_lib_size)

core::Real	score (const core::io::silent::SilentStructOP &ss) const

void	retag_library (protocols::wum::SilentStructStore &store, std::string const prefix) const

std::string	format_silent_struct (const core::io::silent::SilentStructOP &ss) const

core::Real	score (const core::io::silent::SilentStruct &ss) const

std::string	format_silent_struct (const core::io::silent::SilentStruct &ss) const

Protected Member Functions inherited from protocols::wum::MPI_WorkUnitManager
virtual void	print_stats_auto ()
	Print a line with general run statistics, only if enough time has pased since the last statistics printout. More...

void	reset_timing_stats ()
	Reset all the stats counters. More...

void	process_incoming_msgs (bool wait_until_message=false)
	MPI Communication function. More...

void	send_MPI_workunit (const WorkUnitBaseOP &wu, int dest_rank) const
	Send a workunit to an arbitrary recipient. More...

void	receive_MPI_workunit (core::Size node_rank=MPI_ANY_SOURCE)
	Receive a workunit and add it to the inbound queue. By default accept any workunit or accept a specific source rank. Note that this function is blocking and will onyl return once a workunit has been received. More...

void	send_next_WU_on_request ()

char	get_machine_letter ()
	How many masters are there in total ? More...

core::Real	start_timer (MPI_TIMING timing_mode) const
	This initiates a new timer block. Note that there is no end_timer() function - you just keep calling start_timer, which automatically ends the previous block (and records times etc) More...

void	print_timing_stats ()
	Display the timing statistics. More...

long	wall_time () const
	Return the total life time of this class in seconds. More...

Protected Member Functions inherited from protocols::wum::WorkUnitManager
const protocols::wum::WorkUnitList &	work_unit_list () const

protocols::wum::WorkUnitList &	work_unit_list ()

void	write_queues_to_file (const std::string &prefix="default") const

void	write_work_unit (const WorkUnitBaseOP &wu, std::ostream &out) const

void	write_queue (const WorkUnitQueue &the_queue, std::ostream &out) const

void	read_queues_from_file (const std::string &prefix="default")

bool	read_work_unit (WorkUnitBaseOP &qualified_wu, std::istream &in)

void	read_queue (WorkUnitQueue &the_queue, std::istream &in)

core::Size	mem_foot_print () const
	return total memory foot print in bytes More...

Private Member Functions
bool	process_termination ()

Additional Inherited Members
Public Types inherited from protocols::wum::WorkUnitManager
typedef WorkUnitQueue::iterator	iterator

typedef WorkUnitQueue::const_iterator	const_iterator

Protected Types inherited from protocols::wum::MPI_WorkUnitManager
enum	MPI_TIMING { TIMING_WAIT =0, TIMING_TRANSFER_SEND, TIMING_TRANSFER_RECV, TIMING_CPU, TIMING_IO_WRITE, TIMING_IO_READ, TIMING_IDLE, TIMING_end }

Protected Attributes inherited from protocols::mpi_refinement::MPI_Refinement
MultiObjectiveOP	fobj_

core::Size	starttime_

core::Size	totaltime_loophash_

core::Size	n_loophash_

core::Size	totaltime_batchrelax_

core::Size	n_batchrelax_

core::Size	total_structures_

core::Size	total_structures_relax_

core::Size	total_metropolis_

core::Size	total_metropolis_accepts_

bool	native_given_

core::pose::Pose	native_pose_

core::pose::Pose	pose0_

Constructor & Destructor Documentation

protocols::mpi_refinement::MPI_Refine_Emperor::MPI_Refine_Emperor ( )

inline

References set_defaults().

protocols::mpi_refinement::MPI_Refine_Emperor::~MPI_Refine_Emperor ( )

overridedefault

Member Function Documentation

bool protocols::mpi_refinement::MPI_Refine_Emperor::add_structures_to_library	(	protocols::wum::SilentStructStore &	new_structs,
		std::string	add_algorithm = `""`
	)

overrideprotectedvirtual

Reimplemented from protocols::mpi_refinement::MPI_Refinement.

References protocols::wum::SilentStructStore::begin(), and protocols::wum::SilentStructStore::end().

void protocols::mpi_refinement::MPI_Refine_Emperor::go ( )

overridevirtual

Implements protocols::wum::MPI_WorkUnitManager.

References core::init::init(), protocols::wum::mpi_rank(), and TRDEBUG.

void protocols::mpi_refinement::MPI_Refine_Emperor::init ( void )

overrideprotectedvirtual

Implements protocols::wum::MPI_WorkUnitManager.

void protocols::mpi_refinement::MPI_Refine_Emperor::process_inbound_wus ( )

overrideprotectedvirtual

Implements protocols::wum::MPI_WorkUnitManager.

References protocols::wum::SilentStructStore::all_sort_silent_scores(), protocols::wum::WorkUnitBase::print(), protocols::wum::SilentStructStore::size(), and TRDEBUG.

void protocols::mpi_refinement::MPI_Refine_Emperor::process_outbound_wus ( )

overrideprotectedvirtual

Implements protocols::wum::MPI_WorkUnitManager.

bool protocols::mpi_refinement::MPI_Refine_Emperor::process_termination ( )

private

void protocols::mpi_refinement::MPI_Refine_Emperor::set_defaults ( )

Referenced by MPI_Refine_Emperor().

Member Data Documentation

bool protocols::mpi_refinement::MPI_Refine_Emperor::dump_rounds_

private

std::map< core::Size, bool > protocols::mpi_refinement::MPI_Refine_Emperor::masters_done_

private

core::Size protocols::mpi_refinement::MPI_Refine_Emperor::max_emperor_lib_round_

private

core::Size protocols::mpi_refinement::MPI_Refine_Emperor::n_accept_cummul_

private

core::Size protocols::mpi_refinement::MPI_Refine_Emperor::n_addcall_

private

core::Size protocols::mpi_refinement::MPI_Refine_Emperor::n_addcall_emperor_report_

private

core::Size protocols::mpi_refinement::MPI_Refine_Emperor::n_change_emperor_report_

private

core::Size protocols::mpi_refinement::MPI_Refine_Emperor::n_dump_

private

bool protocols::mpi_refinement::MPI_Refine_Emperor::process_termination_

private

bool protocols::mpi_refinement::MPI_Refine_Emperor::termination_broadcasted_

private

The documentation for this class was generated from the following files:

src/protocols/mpi_refinement/MPI_Refine_Emperor.hh
src/protocols/mpi_refinement/MPI_Refine_Emperor.cc

Private Attributes
bool	process_termination_

bool	termination_broadcasted_

std::map< core::Size, bool >	masters_done_

core::Size	max_emperor_lib_round_

bool	dump_rounds_

core::Size	n_accept_cummul_

core::Size	n_addcall_

core::Size	n_change_emperor_report_

core::Size	n_addcall_emperor_report_

core::Size	n_dump_

Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation