core::scoring::constraints::ResidueTypeLinkingConstraint Member List

This is the complete list of members for core::scoring::constraints::ResidueTypeLinkingConstraint, including all inherited members.

add_bonus_map_entry(std::pair< core::chemical::AA, core::chemical::AA > key, core::Real bonus, bool overwrite=false)	core::scoring::constraints::ResidueTypeLinkingConstraint
add_bonus_map_entry(core::chemical::AA aa1, core::chemical::AA aa2, core::Real bonus, bool overwrite=false)	core::scoring::constraints::ResidueTypeLinkingConstraint
add_bonus_map_entry(std::string key, core::Real bonus, bool overwrite=false)	core::scoring::constraints::ResidueTypeLinkingConstraint
atom(Size const ) const override	core::scoring::constraints::ResidueTypeLinkingConstraint	inlinevirtual
AtomID typedef	core::scoring::constraints::Constraint
bonus_map_	core::scoring::constraints::ResidueTypeLinkingConstraint	private
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &)	core::scoring::constraints::Constraint	virtual
clone() const override	core::scoring::constraints::ResidueTypeLinkingConstraint	virtual
core::scoring::constraints::Constraint::clone(func::FuncOP) const	core::scoring::constraints::Constraint	virtual
Constraint(ScoreType const &t)	core::scoring::constraints::Constraint
default_bonus_	core::scoring::constraints::ResidueTypeLinkingConstraint	private
dist(core::scoring::func::XYZ_Func const &xyz) const override	core::scoring::constraints::ResidueTypeLinkingConstraint	virtual
core::scoring::constraints::Constraint::dist(core::pose::Pose const &) const	core::scoring::constraints::Constraint	virtual
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const	core::scoring::constraints::Constraint	virtual
fill_f1_f2(AtomID const &atom, func::XYZ_Func const &xyz, Vector &F1, Vector &F2, EnergyMap const &weights) const override	core::scoring::constraints::ResidueTypeLinkingConstraint	virtual
get_bonus_map()	core::scoring::constraints::ResidueTypeLinkingConstraint
get_default_bonus() const	core::scoring::constraints::ResidueTypeLinkingConstraint
get_func() const	core::scoring::constraints::Constraint	virtual
get_seqpos1() const	core::scoring::constraints::ResidueTypeLinkingConstraint
get_seqpos2() const	core::scoring::constraints::ResidueTypeLinkingConstraint
natoms() const override	core::scoring::constraints::ResidueTypeLinkingConstraint	inlinevirtual
operator!=(Constraint const &other) const	core::scoring::constraints::Constraint
operator==(Constraint const &other) const override	core::scoring::constraints::ResidueTypeLinkingConstraint	virtual
read_constraint(std::istream &, core::pose::Pose const &)	core::scoring::constraints::Constraint	virtual
read_data(std::istream &)	core::scoring::constraints::Constraint	virtual
read_def(std::istream &, pose::Pose const &, core::scoring::func::FuncFactory const &)	core::scoring::constraints::Constraint	virtual
Real typedef	core::scoring::constraints::ResidueTypeLinkingConstraint
remap_resid(core::id::SequenceMapping const &) const	core::scoring::constraints::Constraint	virtual
remapped_clone(pose::Pose const &, pose::Pose const &, id::SequenceMappingCOP map) const	core::scoring::constraints::Constraint	virtual
residues() const override	core::scoring::constraints::ResidueTypeLinkingConstraint	virtual
ResidueTypeLinkingConstraint()	core::scoring::constraints::ResidueTypeLinkingConstraint
ResidueTypeLinkingConstraint(Size seqpos1, Size seqpos2, std::map< std::pair< core::chemical::AA, core::chemical::AA >, core::Real > const &bonus_map)	core::scoring::constraints::ResidueTypeLinkingConstraint
ResidueTypeLinkingConstraint(Size seqpos1, Size seqpos2, Real bonus)	core::scoring::constraints::ResidueTypeLinkingConstraint
ResidueTypeLinkingConstraint(Size seqpos1, Size seqpos2, core::chemical::AA const &AA1, core::chemical::AA const &AA2, Real bonus)	core::scoring::constraints::ResidueTypeLinkingConstraint
same_type_as_me(Constraint const &) const override	core::scoring::constraints::ResidueTypeLinkingConstraint	virtual
score(func::XYZ_Func const &xyz_func, EnergyMap const &weights, EnergyMap &emap) const override	core::scoring::constraints::ResidueTypeLinkingConstraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose) const	core::scoring::constraints::Constraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose, EnergyMap const &weights) const	core::scoring::constraints::Constraint	virtual
score_type() const	core::scoring::constraints::Constraint	inline
seqpos1_	core::scoring::constraints::ResidueTypeLinkingConstraint	private
seqpos2_	core::scoring::constraints::ResidueTypeLinkingConstraint	private
set_bonus_map(std::map< std::pair< core::chemical::AA, core::chemical::AA >, core::Real > const &bonus_map)	core::scoring::constraints::ResidueTypeLinkingConstraint
set_default_bonus(core::Real)	core::scoring::constraints::ResidueTypeLinkingConstraint
set_seqpos1(core::Size seqpos1)	core::scoring::constraints::ResidueTypeLinkingConstraint
set_seqpos2(core::Size seqpos2)	core::scoring::constraints::ResidueTypeLinkingConstraint
setup_for_derivatives(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	virtual
setup_for_scoring(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	virtual
show(std::ostream &out) const override	core::scoring::constraints::ResidueTypeLinkingConstraint	virtual
show_def(std::ostream &, pose::Pose const &) const	core::scoring::constraints::Constraint	virtual
show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const	core::scoring::constraints::Constraint	virtual
steal_def(pose::Pose const &)	core::scoring::constraints::Constraint	virtual
to_string() const	core::scoring::constraints::Constraint
type() const	core::scoring::constraints::Constraint	virtual
~Constraint() override	core::scoring::constraints::Constraint
~ResidueTypeLinkingConstraint() override	core::scoring::constraints::ResidueTypeLinkingConstraint