core::scoring::Energies Member List

This is the complete list of members for core::scoring::Energies, including all inherited members.

accumulate_residue_energies(ScoreType const &type) const	core::scoring::Energies	private
accumulate_residue_total_energies() const	core::scoring::Energies	private
accumulate_residue_total_energy() const	core::scoring::Energies	private
AtomID typedef	core::scoring::Energies
AtomID_Mask typedef	core::scoring::Energies
BAD enum value	core::scoring::Energies	private
BasicDataCache typedef	core::scoring::Energies
clear()	core::scoring::Energies
clear_energies()	core::scoring::Energies
clone() const	core::scoring::Energies	virtual
context_graph(scoring::ContextGraphType type) const	core::scoring::Energies
context_graph(scoring::ContextGraphType type)	core::scoring::Energies
context_graphs() const	core::scoring::Energies	protected
context_graphs_	core::scoring::Energies	mutableprivate
copy_context_graphs(Energies const &other)	core::scoring::Energies	private
copy_lr_energy_containers(Energies const &other)	core::scoring::Energies	private
copy_nblists(Energies const &other)	core::scoring::Energies	private
data() const	core::scoring::Energies	inline
data()	core::scoring::Energies	inline
data_cache_	core::scoring::Energies	private
delete_graph_edges_using_domain_map(utility::graph::Graph &g)	core::scoring::Energies	private
discard_conformation_domain_map() const	core::scoring::Energies
domain_map(int const pos) const	core::scoring::Energies	inline
domain_map() const	core::scoring::Energies	inline
domain_map_	core::scoring::Energies	private
domain_map_during_minimization(int const pos) const	core::scoring::Energies	inlineprotected
DomainMap typedef	core::scoring::Energies
Energies()	core::scoring::Energies
Energies(Energies const &src)	core::scoring::Energies
energies_updated() const	core::scoring::Energies	inline
energy_graph() const	core::scoring::Energies
energy_graph()	core::scoring::Energies
energy_graph_	core::scoring::Energies	mutableprivate
energy_graph_no_state_check()	core::scoring::Energies	protected
energy_state_	core::scoring::Energies	mutableprivate
EnergyGraph typedef	core::scoring::Energies
EnergyMap typedef	core::scoring::Energies
EnergyState enum name	core::scoring::Energies	private
externally_required_context_graphs_	core::scoring::Energies	mutableprivate
fill_point_graph(pose::Pose const &pose, conformation::PointGraphOP pg) const	core::scoring::Energies	privatevirtual
finalized_energies() const	core::scoring::Energies	inline
finalized_energies()	core::scoring::Energies	inline
finalized_energies_	core::scoring::Energies	private
get_scorefxn_info() const	core::scoring::Energies	inline
GOOD enum value	core::scoring::Energies	private
Graph typedef	core::scoring::Energies
graph_state_	core::scoring::Energies	mutableprivate
internalize_new_domain_map()	core::scoring::Energies	private
long_range_container(methods::LongRangeEnergyType) const	core::scoring::Energies
long_range_energy_containers_	core::scoring::Energies	private
max_context_neighbor_cutoff() const	core::scoring::Energies	protected
max_context_neighbor_cutoff_	core::scoring::Energies	mutableprivate
minimization_graph()	core::scoring::Energies
minimization_graph() const	core::scoring::Energies
minimization_graph_	core::scoring::Energies	private
MOD enum value	core::scoring::Energies	private
nblist(EnergiesCacheableDataType::Enum const &type) const	core::scoring::Energies
nblist_	core::scoring::Energies	private
NeighborList typedef	core::scoring::Energies
nonconst_long_range_container(methods::LongRangeEnergyType)	core::scoring::Energies
onebody_energies(int const seqpos) const	core::scoring::Energies	inline
onebody_energies(int const seqpos)	core::scoring::Energies	inline
onebody_energies_	core::scoring::Energies	private
operator<<(std::ostream &out, const Energies &e)	core::scoring::Energies	friend
operator=(Energies const &rhs)	core::scoring::Energies	virtual
owner() const	core::scoring::Energies	protected
owner_	core::scoring::Energies	private
point_graph()	core::scoring::Energies	protected
point_graph_	core::scoring::Energies	private
prepare_neighbor_graphs()	core::scoring::Energies	private
require_context_graph(scoring::ContextGraphType) const	core::scoring::Energies
require_context_graph_(scoring::ContextGraphType type, bool external) const	core::scoring::Energies	privatevirtual
require_scoring() const	core::scoring::Energies	inlineprivate
required_context_graphs() const	core::scoring::Energies	protected
required_context_graphs_	core::scoring::Energies	mutableprivate
res_moved(int const seqpos) const	core::scoring::Energies
reset_nblist()	core::scoring::Energies
reset_res_moved(int const seqpos)	core::scoring::Energies
residue_neighbors_updated() const	core::scoring::Energies	inline
residue_total_energies(int const seqpos) const	core::scoring::Energies	inline
residue_total_energies_	core::scoring::Energies	mutableprivate
residue_total_energies_uptodate_	core::scoring::Energies	mutableprivate
residue_total_energy(int const seqpos) const	core::scoring::Energies	inline
residue_total_energy_	core::scoring::Energies	mutableprivate
residue_total_energy_uptodate_	core::scoring::Energies	mutableprivate
same_type_as_me(Energies const &other, bool recurse=true) const	core::scoring::Energies	virtual
ScoreFunctionInfo typedef	core::scoring::Energies
scorefxn_info_	core::scoring::Energies	private
scorefxn_weights_	core::scoring::Energies	private
ScoreType typedef	core::scoring::Energies
scoring() const	core::scoring::Energies	inline
scoring_	core::scoring::Energies	private
scoring_begin(scoring::ScoreFunction const &sfxn, pose::Pose const &pose)	core::scoring::Energies
scoring_end(scoring::ScoreFunction const &scorefxn)	core::scoring::Energies
set_long_range_container(methods::LongRangeEnergyType, LREnergyContainerOP)	core::scoring::Energies
set_max_context_neighbor_cutoff(Real val) const	core::scoring::Energies	protected
set_minimization_graph(MinimizationGraphOP)	core::scoring::Energies
set_nblist(EnergiesCacheableDataType::Enum const &type, scoring::NeighborListOP nblist_in)	core::scoring::Energies
set_owner(pose::Pose *owner)	core::scoring::Energies
set_scorefxn_info(scoring::ScoreFunctionInfoOP info)	core::scoring::Energies	private
set_size(Size const size_in)	core::scoring::Energies	private
set_use_nblist(pose::Pose const &pose, DomainMap const &domain_map_in, bool const use_nblist_auto_update)	core::scoring::Energies
show(std::ostream &out) const	core::scoring::Energies
show(std::ostream &out, Size res) const	core::scoring::Energies
show() const	core::scoring::Energies
show(Size res) const	core::scoring::Energies
show_total_headers(std::ostream &out) const	core::scoring::Energies
show_totals(std::ostream &out) const	core::scoring::Energies
size() const	core::scoring::Energies	inline
size_	core::scoring::Energies	private
structure_has_moved(Size const nres) const	core::scoring::Energies
tenA_neighbor_graph() const	core::scoring::Energies
tenA_neighbor_graph()	core::scoring::Energies
total_energies() const	core::scoring::Energies
total_energies()	core::scoring::Energies
total_energies_	core::scoring::Energies	mutableprivate
total_energy() const	core::scoring::Energies	inline
total_energy()	core::scoring::Energies	inline
total_energy_	core::scoring::Energies	mutableprivate
twelveA_neighbor_graph() const	core::scoring::Energies
twelveA_neighbor_graph()	core::scoring::Energies
update_component_energies() const	core::scoring::Energies	private
update_domainmap_for_lr_energy_container(LREnergyContainerOP lrec)	core::scoring::Energies	private
update_neighbor_links(pose::Pose const &pose)	core::scoring::Energies	privatevirtual
update_residue_neighbors(DomainMap const &domain_map_in, pose::Pose const &pose)	core::scoring::Energies
use_nblist() const	core::scoring::Energies	inline
use_nblist_	core::scoring::Energies	private
use_nblist_auto_update() const	core::scoring::Energies	inline
use_nblist_auto_update_	core::scoring::Energies	private
use_nblist_of_type(EnergiesCacheableDataType::Enum const &type) const	core::scoring::Energies	inline
weights() const	core::scoring::Energies
weights(EnergyMap new_weights)	core::scoring::Energies
~Energies() override	core::scoring::Energies