protocols::task_operations::SelectByDensityFitOperation Class Reference

#include <SelectByDensityFitOperation.hh>

Inheritance diagram for protocols::task_operations::SelectByDensityFitOperation:

Public Member Functions
	SelectByDensityFitOperation (core::Real threshold=0.72, bool invert=0)
	~SelectByDensityFitOperation () override
core::pack::task::operation::TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	parse_tag (TagCOP tag, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
core::Real	threshold_
bool	invert_

Additional Inherited Members
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Constructor & Destructor Documentation

protocols::task_operations::SelectByDensityFitOperation::SelectByDensityFitOperation	(	core::Real	threshold = 0.72,
		bool	invert = 0
	)

protocols::task_operations::SelectByDensityFitOperation::~SelectByDensityFitOperation ( )

overridedefault

Member Function Documentation

void protocols::task_operations::SelectByDensityFitOperation::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References core::pack::task::ResidueLevelTask::being_designed(), core::pack::task::ResidueLevelTask::being_packed(), core::scoring::elec_dens_window, core::scoring::get_score_function(), core::scoring::electron_density::getDensityMap(), invert_, core::scoring::electron_density::ElectronDensity::matchRes(), core::pack::task::PackerTask::nonconst_residue_task(), core::pack::task::ResidueLevelTask::prevent_repacking(), protocols::hybridization::score, core::scoring::electron_density::ElectronDensity::set_nres(), core::scoring::electron_density::ElectronDensity::setScoreWindowContext(), core::scoring::electron_density::ElectronDensity::setWindow(), core::pose::Pose::size(), threshold_, and protocols::task_operations::TR().

core::pack::task::operation::TaskOperationOP protocols::task_operations::SelectByDensityFitOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

static std::string protocols::task_operations::SelectByDensityFitOperation::keyname ( )

inlinestatic

Referenced by protocols::task_operations::SelectByDensityFitOperationCreator::keyname(), and provide_xml_schema().

void protocols::task_operations::SelectByDensityFitOperation::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References invert_, and threshold_.

void protocols::task_operations::SelectByDensityFitOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::SelectByDensityFitOperationCreator::provide_xml_schema().

Member Data Documentation

bool protocols::task_operations::SelectByDensityFitOperation::invert_

private

Referenced by apply(), and parse_tag().

core::Real protocols::task_operations::SelectByDensityFitOperation::threshold_

private

Referenced by apply(), and parse_tag().

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The documentation for this class was generated from the following files:

• src/protocols/task_operations/SelectByDensityFitOperation.hh
• src/protocols/task_operations/SelectByDensityFitOperation.cc