#include <MultistateFitnessFunction.hh>

Inheritance diagram for protocols::pack_daemon::TopEntitySet:

Public Types
typedef protocols::genetic_algorithm::Entity	Entity

typedef protocols::genetic_algorithm::EntityOP	EntityOP

typedef utility::vector1 < core::Real >	StateEnergies

typedef std::pair < StateEnergies, StateEnergies >	StateEnergiesAndNPDs

typedef std::pair< EntityOP, StateEnergiesAndNPDs >	EntityAndScore

typedef utility::vector1 < EntityAndScore >	EntityHistory

Public Member Functions
	TopEntitySet ()

core::Size	size () const

EntityAndScore const &	operator[] (core::Size index) const

EntityAndScore &	operator[] (core::Size index)

void	desired_entity_history_size (core::Size setting)

core::Size	desired_entity_history_size () const

void	clear ()

std::list < genetic_algorithm::EntityOP >	update_entity_history (Entity const &ent, StateEnergiesAndNPDs const &seanpds, bool &added_new_entity)
	Update the internal history after receiving a new entity; returns the list of entities that are to be discarded. The boolean added_new_entity is set to true if the given entity was added to the the list of top entities. More...

core::Size	index_of_entity (Entity const &ent) const

EntityAndScore	pop ()
	remove the worst entity from the set and return it More...

Private Attributes
core::Size	desired_entity_history_size_

core::Size	n_tied_for_worst_

EntityHistory	top_entities_

Member Typedef Documentation

typedef protocols::genetic_algorithm::Entity protocols::pack_daemon::TopEntitySet::Entity

typedef std::pair< EntityOP, StateEnergiesAndNPDs > protocols::pack_daemon::TopEntitySet::EntityAndScore

typedef utility::vector1< EntityAndScore > protocols::pack_daemon::TopEntitySet::EntityHistory

typedef protocols::genetic_algorithm::EntityOP protocols::pack_daemon::TopEntitySet::EntityOP

typedef utility::vector1< core::Real > protocols::pack_daemon::TopEntitySet::StateEnergies

typedef std::pair< StateEnergies, StateEnergies > protocols::pack_daemon::TopEntitySet::StateEnergiesAndNPDs

Constructor & Destructor Documentation

protocols::pack_daemon::TopEntitySet::TopEntitySet ( )

Member Function Documentation

void protocols::pack_daemon::TopEntitySet::clear ( )

References n_tied_for_worst_, and top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::clear_history().

void protocols::pack_daemon::TopEntitySet::desired_entity_history_size ( core::Size setting )

References desired_entity_history_size_, n_tied_for_worst_, and top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::set_history_size().

core::Size protocols::pack_daemon::TopEntitySet::desired_entity_history_size ( ) const

References desired_entity_history_size_.

core::Size protocols::pack_daemon::TopEntitySet::index_of_entity ( Entity const & ent ) const

References top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::recover_relevant_poses_for_entity().

TopEntitySet::EntityAndScore const & protocols::pack_daemon::TopEntitySet::operator[] ( core::Size index ) const

References top_entities_.

TopEntitySet::EntityAndScore & protocols::pack_daemon::TopEntitySet::operator[] ( core::Size index )

References top_entities_.

TopEntitySet::EntityAndScore protocols::pack_daemon::TopEntitySet::pop ( )

remove the worst entity from the set and return it

References top_entities_.

core::Size protocols::pack_daemon::TopEntitySet::size ( ) const

References top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::recover_relevant_poses_for_entity().

std::list< TopEntitySet::EntityOP > protocols::pack_daemon::TopEntitySet::update_entity_history	(	Entity const &	ent,
		StateEnergiesAndNPDs const &	seanpds,
		bool &	added_new_entity
	)

Update the internal history after receiving a new entity; returns the list of entities that are to be discarded. The boolean added_new_entity is set to true if the given entity was added to the the list of top entities.

References desired_entity_history_size_, protocols::genetic_algorithm::Entity::fitness(), n_tied_for_worst_, and top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::update_entity_history().