protocols::jd3::full_model Namespace Reference

Classes
class	FullModelInnerLarvalJob
class	FullModelJobQueen
	The FullModelJobQueen is meant to handle the most common form of Rosetta jobs where a protocol is applied to a single input structure to generate a single output structure. Most JobQueens in Rosetta will to derive from this JobQueen. To make the process of deriving new JobQueens easy, this class's API has been carefully designed to be easy to work with and the class itself has been designed to do as much heavy lifting as possible and to leave only the responsibilities that the FullModelJobQueen could not perform to the derived classes. More...
class	FullModelPreliminaryLarvalJob

Typedefs
typedef utility::pointer::shared_ptr < FullModelInnerLarvalJob >	FullModelInnerLarvalJobOP
typedef utility::pointer::shared_ptr < FullModelInnerLarvalJob const >	FullModelInnerLarvalJobCOP
typedef utility::vector1 < FullModelInnerLarvalJobOP >	FullModelInnerLarvalJobs
typedef utility::pointer::shared_ptr < FullModelJobQueen >	FullModelJobQueenOP
typedef utility::pointer::shared_ptr < FullModelJobQueen const >	FullModelJobQueenCOP
typedef utility::pointer::shared_ptr < PreliminaryLarvalJob >	PreliminaryLarvalJobOP
typedef utility::pointer::shared_ptr < PreliminaryLarvalJob const >	PreliminaryLarvalJobCOP
typedef std::list < FullModelPreliminaryLarvalJob >	FullModelPreliminaryLarvalJobs

Functions
std::ostream &	operator<< (std::ostream &out, const FullModelInnerLarvalJob &inner_job)
utility::excn::Exception	bad_inner_job_exception ()
utility::options::OptionTypes	option_type_from_key (utility::options::OptionKey const &key)
utility::tag::XMLSchemaType	value_attribute_type_for_option (utility::options::OptionTypes const &key)

Typedef Documentation

typedef utility::pointer::shared_ptr< FullModelInnerLarvalJob const > protocols::jd3::full_model::FullModelInnerLarvalJobCOP

typedef utility::pointer::shared_ptr< FullModelInnerLarvalJob > protocols::jd3::full_model::FullModelInnerLarvalJobOP

typedef utility::vector1< FullModelInnerLarvalJobOP > protocols::jd3::full_model::FullModelInnerLarvalJobs

typedef utility::pointer::shared_ptr< FullModelJobQueen const > protocols::jd3::full_model::FullModelJobQueenCOP

typedef utility::pointer::shared_ptr< FullModelJobQueen > protocols::jd3::full_model::FullModelJobQueenOP

typedef std::list< FullModelPreliminaryLarvalJob > protocols::jd3::full_model::FullModelPreliminaryLarvalJobs

typedef utility::pointer::shared_ptr< PreliminaryLarvalJob const > protocols::jd3::full_model::PreliminaryLarvalJobCOP

typedef utility::pointer::shared_ptr< PreliminaryLarvalJob > protocols::jd3::full_model::PreliminaryLarvalJobOP

Function Documentation

utility::excn::Exception protocols::jd3::full_model::bad_inner_job_exception

(

)

Referenced by protocols::jd3::full_model::FullModelJobQueen::create_and_store_output_specification_for_job_result(), protocols::jd3::full_model::FullModelJobQueen::create_output_specification_for_job_result(), protocols::jd3::full_model::FullModelJobQueen::has_job_previously_been_output(), protocols::jd3::full_model::FullModelJobQueen::mature_larval_job(), protocols::jd3::full_model::FullModelJobQueen::note_job_completed(), and protocols::jd3::full_model::FullModelJobQueen::pose_for_job().

std::ostream& protocols::jd3::full_model::operator<<	(	std::ostream &	out,
		const FullModelInnerLarvalJob &	inner_job
	)

References core::conformation::membrane::out, and protocols::jd3::full_model::FullModelInnerLarvalJob::show().

utility::options::OptionTypes protocols::jd3::full_model::option_type_from_key

(

utility::options::OptionKey const &

key

)

Referenced by protocols::jd3::full_model::FullModelJobQueen::job_definition_xsd(), and protocols::jd3::full_model::FullModelJobQueen::options_from_tag().

utility::tag::XMLSchemaType protocols::jd3::full_model::value_attribute_type_for_option

(

utility::options::OptionTypes const &

key

)

Referenced by protocols::jd3::full_model::FullModelJobQueen::job_definition_xsd().