 |
Rosetta
2021.16
|
All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
|
Rosetta
2021.16
|
A patch operation for adding an atom alias to a ResidueType. More...
#include <PatchOperation.hh>
Public Member Functions | |
| AddAtomAlias (std::string const &rosetta_atom_name_in, utility::vector1< std::string > const &aliases_in, std::string const &preferred_alias_in) | |
| bool | apply (MutableResidueType &rsd) const override |
| Apply this patch to the given ResidueType. More... | |
| std::string | name () const override |
| Return the name of this PatchOperation ("AddAtomAlias"). More... | |
| utility::vector1< std::string > | adds_atoms () override |
| Return a list of all atom names that this operation adds (as aliases). More... | |
 Public Member Functions inherited from core::chemical::PatchOperation | |
| ~PatchOperation () override | |
| Automatically generated virtual destructor for class deriving directly from VirtualBase. More... | |
| virtual std::string | deletes_atom () |
| Which atom, if any, is deleted. Used for fast matching of ResidueType/Patches to PDB residues. More... | |
| virtual std::string | adds_property () const |
| Which property, if any, is added. More... | |
| virtual ResidueProperty | adds_property_enum () const |
| Which property, if any, is added. More... | |
| virtual std::string | deletes_property () const |
| Which property, if any, is deleted. More... | |
| virtual ResidueProperty | deletes_property_enum () const |
| Which property, if any, is deleted. More... | |
| virtual std::string | deletes_variant () const |
| Which variant, if any, is deleted. More... | |
| virtual VariantType | deletes_variant_enum () const |
| Which variant, if any, is deleted, by enum. More... | |
| virtual bool | may_change_aa () |
| Generates a new aa. More... | |
| virtual bool | changes_connections_on (ResidueType const &, std::string const &) const |
| Can this case change connections for the atom on the residue? More... | |
| virtual std::string | generates_name3 () |
| Generates name3. More... | |
| virtual std::string | generates_interchangeability_group () |
| Generates interchangeability_group. More... | |
| virtual bool | generates_base_residue_type () const |
| Generates base residue – legacy for D_AA – do not use otherwise. More... | |
| virtual bool | applies_to_placeholder () const |
| Special – does this apply to 'minimal', placeholder types? Generally true, unless updating aa or name3. More... | |
Private Attributes | |
| std::string | rosetta_atom_name_ |
| utility::vector1< std::string > | aliases_ |
| std::string | preferred_alias_ |
A patch operation for adding an atom alias to a ResidueType.
| core::chemical::AddAtomAlias::AddAtomAlias | ( | std::string const & | rosetta_atom_name_in, |
| utility::vector1< std::string > const & | aliases_in, | ||
| std::string const & | preferred_alias_in | ||
| ) |
|
inlineoverridevirtual |
Return a list of all atom names that this operation adds (as aliases).
All of the aliases for an atom must be offered as options to the ResidueTypeFinder.
Reimplemented from core::chemical::PatchOperation.
References aliases_.
|
overridevirtual |
Apply this patch to the given ResidueType.
Implements core::chemical::PatchOperation.
References core::chemical::MutableResidueType::add_atom_alias(), core::chemical::MutableResidueType::add_canonical_atom_alias(), aliases_, preferred_alias_, and rosetta_atom_name_.
|
overridevirtual |
Return the name of this PatchOperation ("AddAtomAlias").
Implements core::chemical::PatchOperation.
|
private |
Referenced by adds_atoms(), and apply().
|
private |
Referenced by apply().
|
private |
Referenced by apply().
1.8.7