core::select::residue_selector::ChainSelector Class Reference

#include <ChainSelector.hh>

Inheritance diagram for core::select::residue_selector::ChainSelector:

Public Member Functions
	ChainSelector ()
	ChainSelector (ChainSelector const &src)
	Copy constructor. More...
	ChainSelector (std::string const &chains)
	ChainSelector (char chain)
	ChainSelector (int chainid)
	ChainSelector (core::Size chainid)
	~ChainSelector () override
ResidueSelectorOP	clone () const override
	Clone operator. More...
ResidueSubset	apply (core::pose::Pose const &pose) const override
	Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override
std::string	get_name () const override
utility::vector1< std::string > const &	chain_strings () const
void	set_chain_strings (utility::vector1< std::string > const &)
Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...
	~ResidueSelector () override
	Destructor. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Member Functions
void	select_chain_by_index (core::pose::Pose const &, ResidueSubset &, core::Size) const
void	select_chain_by_pdb_chain_char (core::pose::Pose const &, ResidueSubset &, char) const

Private Attributes
utility::vector1< std::string >	chain_strings_

Constructor & Destructor Documentation

core::select::residue_selector::ChainSelector::ChainSelector

(

)

core::select::residue_selector::ChainSelector::ChainSelector

(

ChainSelector const &

src

)

Copy constructor.

core::select::residue_selector::ChainSelector::ChainSelector

(

std::string const &

chains

)

core::select::residue_selector::ChainSelector::ChainSelector

(

char

chain

)

core::select::residue_selector::ChainSelector::ChainSelector

(

int

chainid

)

core::select::residue_selector::ChainSelector::ChainSelector

(

core::Size

chainid

)

core::select::residue_selector::ChainSelector::~ChainSelector ( )

overridedefault

Member Function Documentation

ResidueSubset core::select::residue_selector::ChainSelector::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not.

Implements core::select::residue_selector::ResidueSelector.

References chain_strings_, protocols::pack_daemon::error_message, select_chain_by_index(), select_chain_by_pdb_chain_char(), and core::pose::Pose::size().

Referenced by protocols::ligand_docking::get_interface_deltas().

utility::vector1< std::string > const & core::select::residue_selector::ChainSelector::chain_strings

(

)

const

References chain_strings_.

std::string core::select::residue_selector::ChainSelector::class_name ( )

static

Referenced by get_name(), core::select::residue_selector::ChainSelectorCreator::keyname(), and provide_xml_schema().

ResidueSelectorOP core::select::residue_selector::ChainSelector::clone ( ) const

overridevirtual

Clone operator.

Copy this object and return an owning pointer to the new object.

Implements core::select::residue_selector::ResidueSelector.

std::string core::select::residue_selector::ChainSelector::get_name ( ) const

overridevirtual

Implements core::select::residue_selector::ResidueSelector.

References class_name().

Referenced by select_chain_by_pdb_chain_char().

void core::select::residue_selector::ChainSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datamap  )

overridevirtual

Chains are given either as single characters (matched against the chain in the input PDB) or as integers (matched against the pose-assigned index for the chain) in a comma-separated list.

Reimplemented from core::select::residue_selector::ResidueSelector.

References chain_strings_, and protocols::pack_daemon::error_message.

void core::select::residue_selector::ChainSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and core::select::residue_selector::xsd_type_definition_w_attributes().

Referenced by core::select::residue_selector::ChainSelectorCreator::provide_xml_schema().

void core::select::residue_selector::ChainSelector::select_chain_by_index ( core::pose::Pose const &  pose, ResidueSubset &  subset, core::Size  chain_index  ) const

private

References core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), and core::conformation::Conformation::num_chains().

Referenced by apply().

void core::select::residue_selector::ChainSelector::select_chain_by_pdb_chain_char ( core::pose::Pose const &  pose, ResidueSubset &  subset, char  ch  ) const

private

References get_name(), core::pose::Pose::pdb_info(), and core::pose::Pose::size().

Referenced by apply().

void core::select::residue_selector::ChainSelector::set_chain_strings

(

utility::vector1< std::string > const &

setting

)

References chain_strings_.

Member Data Documentation

utility::vector1< std::string > core::select::residue_selector::ChainSelector::chain_strings_

private

Referenced by apply(), chain_strings(), parse_my_tag(), and set_chain_strings().

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The documentation for this class was generated from the following files:

• src/core/select/residue_selector/ChainSelector.hh
• src/core/select/residue_selector/ChainSelector.cc