core::pack::task::operation::OptCysHG Class Reference

run optH on non-disulfided bonded CYS only; meant to relieve any clashes caused by swapping of CYD->CYS after calling Conformation::detect_disulfides() More...

#include <OptCysHG.hh>

Inheritance diagram for core::pack::task::operation::OptCysHG:

Public Types
typedef core::pack::task::PackerTask	PackerTask
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef core::pose::Pose	Pose
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	OptCysHG ()
	default constructor More...
	OptCysHG (OptCysHG const &rval)
	copy constructor More...
	~OptCysHG () override
	default destructor More...
TaskOperationOP	clone () const override
	clone this object More...
void	apply (Pose const &pose, PackerTask &task) const override
	apply operations to PackerTask More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	parse_tag (TagCOP, DataMap &)
	Used to parse an xml-like tag to load parameters and properties. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	keyname ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef core::pack::task::operation::TaskOperation	Super

Detailed Description

run optH on non-disulfided bonded CYS only; meant to relieve any clashes caused by swapping of CYD->CYS after calling Conformation::detect_disulfides()

Member Typedef Documentation

typedef core::pack::task::PackerTask core::pack::task::operation::OptCysHG::PackerTask

typedef core::pose::Pose core::pack::task::operation::OptCysHG::Pose

typedef core::pack::task::operation::TaskOperation core::pack::task::operation::OptCysHG::Super

private

typedef core::pack::task::operation::TaskOperationOP core::pack::task::operation::OptCysHG::TaskOperationOP

Constructor & Destructor Documentation

core::pack::task::operation::OptCysHG::OptCysHG

(

)

default constructor

core::pack::task::operation::OptCysHG::OptCysHG ( OptCysHG const &  rval )

default

copy constructor

core::pack::task::operation::OptCysHG::~OptCysHG ( )

overridedefault

default destructor

Member Function Documentation

void core::pack::task::operation::OptCysHG::apply ( Pose const &  pose, PackerTask &  task  ) const

overridevirtual

apply operations to PackerTask

Implements core::pack::task::operation::TaskOperation.

References core::chemical::aa_cys, core::pack::task::operation::OptH::apply(), core::pack::task::operation::OptH::disallow_resid(), core::chemical::DISULFIDE, core::chemical::ResidueTypeBase::has_variant_type(), core::chemical::ResidueType::is_sidechain_thiol(), core::pose::Pose::residue_type(), and core::pose::Pose::size().

OptCysHG::TaskOperationOP core::pack::task::operation::OptCysHG::clone ( ) const

overridevirtual

clone this object

Implements core::pack::task::operation::TaskOperation.

std::string core::pack::task::operation::OptCysHG::keyname ( )

static

Referenced by core::pack::task::operation::OptCysHGCreator::keyname(), and provide_xml_schema().

void core::pack::task::operation::OptCysHG::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_empty().

Referenced by core::pack::task::operation::OptCysHGCreator::provide_xml_schema().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/OptCysHG.hh
• src/core/pack/task/operation/OptCysHG.cc