| atomic_interaction_cutoff() const | core::scoring::methods::WholeStructureEnergy | inlinevirtual |
| calculate_pcs_score(core::pose::Pose &pose, bool print_to_tracer) const | protocols::scoring::methods::pcs::PCS_Energy | |
| calculate_scores_and_tensors_from_pose_and_PCS_data(utility::vector1< core::Real > &vec_best_score, utility::vector1< PCS_tensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, core::pose::Pose const &pdb, PCS_data &pcs_d) const | protocols::scoring::methods::pcs::PCS_Energy | |
| clone() const override | protocols::scoring::methods::pcs::PCS_Energy | virtual |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| dump_PCS_info(utility::vector1< PCS_tensor > const &vec_tensor, numeric::xyzVector< core::Real > const &best_coo, PCS_data const &pcs_d) const | protocols::scoring::methods::pcs::PCS_Energy | |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_after_minimizing(pose::Pose &pose) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const override | protocols::scoring::methods::pcs::PCS_Energy | virtual |
| indicate_required_context_graphs(utility::vector1< bool > &) const override | protocols::scoring::methods::pcs::PCS_Energy | virtual |
| method_type() const override | core::scoring::methods::WholeStructureEnergy | virtual |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| minimize_tensors_from_PCS_data(utility::vector1< PCS_tensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, PCS_data const &pcs_d) const | protocols::scoring::methods::pcs::PCS_Energy | |
| operator=(PCS_Energy const &other) | protocols::scoring::methods::pcs::PCS_Energy | |
| parent typedef | protocols::scoring::methods::pcs::PCS_Energy | |
| PCS_data_from_pose(core::pose::Pose &pose) const | protocols::scoring::methods::pcs::PCS_Energy | |
| PCS_Energy() | protocols::scoring::methods::pcs::PCS_Energy | |
| PCS_Energy(PCS_Energy const &other) | protocols::scoring::methods::pcs::PCS_Energy | |
| prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | virtual |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | core::scoring::methods::EnergyMethod | virtual |
| requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const | core::scoring::methods::EnergyMethod | virtual |
| score_types() const | core::scoring::methods::EnergyMethod | inline |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | protected |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const | core::scoring::methods::EnergyMethod | virtual |
| show_additional_info(std::ostream &out, core::pose::Pose &pose, bool verbose=false) const override | protocols::scoring::methods::pcs::PCS_Energy | virtual |
| update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | virtual |
| version() const override | protocols::scoring::methods::pcs::PCS_Energy | virtual |
| WholeStructureEnergy(EnergyMethodCreatorOP) | core::scoring::methods::WholeStructureEnergy | |
| ~PCS_Energy() override | protocols::scoring::methods::pcs::PCS_Energy | |
| ~WholeStructureEnergy() override | core::scoring::methods::WholeStructureEnergy | inline |
1.8.7