| add_base_residue_type(std::string const &name, core::chemical::ResidueTypeSet const &restypeset, BaseTypeList &base_types) const | core::pack::palette::PackerPalette | protected |
| add_base_residue_types_by_properties(utility::vector1< core::chemical::ResidueProperty > const &properties, core::chemical::ResidueTypeSet const &restypeset, BaseTypeList &base_types) const | core::pack::palette::PackerPalette | protected |
| add_type(std::string const &type) | core::pack::palette::CustomBaseTypePackerPalette | |
| add_xsd_options(utility::tag::AttributeList &attlist) | core::pack::palette::CustomBaseTypePackerPalette | static |
| additional_residue_types_ | core::pack::palette::CustomBaseTypePackerPalette | private |
| clone() const override | core::pack::palette::CustomBaseTypePackerPalette | virtual |
| CustomBaseTypePackerPalette() | core::pack::palette::CustomBaseTypePackerPalette | |
| get_base_names_by_properties(core::chemical::ResidueTypeSet const &restypeset, utility::vector1< core::chemical::ResidueProperty > const &properties) const | core::pack::palette::PackerPalette | protected |
| get_base_residue_types(core::chemical::ResidueTypeSetCOP const &restypeset) const override | core::pack::palette::CustomBaseTypePackerPalette | protectedvirtual |
| get_base_residue_types_cached(core::chemical::ResidueTypeSetCOP const &restypeset) const | core::pack::palette::PackerPalette | protected |
| get_self_ptr() const | core::pack::palette::PackerPalette | inline |
| get_self_ptr() | core::pack::palette::PackerPalette | inline |
| has_type(std::string const &type) const | core::pack::palette::CustomBaseTypePackerPalette | |
| initialize_from_file_contents(std::string const &file_contents, std::string const &filename) | core::pack::palette::CustomBaseTypePackerPalette | |
| initialize_residue_level_task(core::conformation::Residue const &existing_residue, core::chemical::ResidueTypeSetCOP restypeset, std::list< chemical::ResidueTypeCOP > &residue_type_list) const | core::pack::palette::PackerPalette | |
| name() const override | core::pack::palette::CustomBaseTypePackerPalette | virtual |
| PackerPalette() | core::pack::palette::PackerPalette | |
| parent typedef | core::pack::palette::CustomBaseTypePackerPalette | private |
| parse_additional_residue_types(std::string const &typelist) | core::pack::palette::CustomBaseTypePackerPalette | |
| parse_my_tag(utility::tag::TagCOP const &tag, basic::datacache::DataMap const &datamap) override | core::pack::palette::CustomBaseTypePackerPalette | virtual |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const override | core::pack::palette::CustomBaseTypePackerPalette | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | core::pack::palette::CustomBaseTypePackerPalette | static |
| set_force_existing_base_type(bool const setting) | core::pack::palette::PackerPalette | protected |
| set_only_design_polymer_residues(bool const setting) | core::pack::palette::PackerPalette | protected |
| set_only_design_protein_peptoid_dna_saccharide(bool const setting) | core::pack::palette::PackerPalette | protected |
| set_up_behaviours() | core::pack::palette::CustomBaseTypePackerPalette | private |
| set_up_default_base_types(core::chemical::ResidueTypeSet const &restypeset, BaseTypeList &base_types) const | core::pack::palette::PackerPalette | protected |
| set_up_default_special_behaviours() | core::pack::palette::PackerPalette | |
| set_up_expanded_base_types(core::chemical::ResidueTypeSet const &restypeset, BaseTypeList &base_types) const | core::pack::palette::PackerPalette | protected |
| ~CustomBaseTypePackerPalette() override | core::pack::palette::CustomBaseTypePackerPalette | |
| ~PackerPalette() override | core::pack::palette::PackerPalette | |
1.8.7