core::select::residue_selector::ResidueInMembraneSelector Class Reference

The ResidueInMembraneSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which are either in or out of the membrane. default is in. More...

#include <ResidueInMembraneSelector.hh>

Inheritance diagram for core::select::residue_selector::ResidueInMembraneSelector:

Public Member Functions
	ResidueInMembraneSelector ()
	~ResidueInMembraneSelector () override
	ResidueInMembraneSelector (ResidueInMembraneSelector const &src)
	Copy constructor. More...
ResidueSelectorOP	clone () const override
	Clone operator. More...
ResidueSubset	apply (core::pose::Pose const &pose) const override
	Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Initialize any data members of this instance from an input tag and a DataMap object. More...
std::string	get_name () const override
void	set_select_in_membrane (bool const &select_in_membrane)
Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...
	~ResidueSelector () override
	Destructor. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
bool	select_in_membrane_

Detailed Description

The ResidueInMembraneSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which are either in or out of the membrane. default is in.

Constructor & Destructor Documentation

core::select::residue_selector::ResidueInMembraneSelector::ResidueInMembraneSelector

(

)

core::select::residue_selector::ResidueInMembraneSelector::~ResidueInMembraneSelector ( )

override

core::select::residue_selector::ResidueInMembraneSelector::ResidueInMembraneSelector

(

ResidueInMembraneSelector const &

src

)

Copy constructor.

Member Function Documentation

ResidueSubset core::select::residue_selector::ResidueInMembraneSelector::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not.

Implements core::select::residue_selector::ResidueSelector.

References core::pose::Pose::conformation(), core::conformation::Residue::is_protein(), core::conformation::Conformation::membrane_info(), core::pose::Pose::residue(), select_in_membrane_, core::conformation::Residue::seqpos(), core::conformation::membrane::thickness, and core::pose::Pose::total_residue().

std::string core::select::residue_selector::ResidueInMembraneSelector::class_name ( )

static

Referenced by get_name(), core::select::residue_selector::ResidueInMembraneSelectorCreator::keyname(), and provide_xml_schema().

ResidueSelectorOP core::select::residue_selector::ResidueInMembraneSelector::clone ( ) const

overridevirtual

Clone operator.

Copy this object and return an owning pointer to the new object.

Implements core::select::residue_selector::ResidueSelector.

std::string core::select::residue_selector::ResidueInMembraneSelector::get_name ( ) const

overridevirtual

Implements core::select::residue_selector::ResidueSelector.

References class_name().

void core::select::residue_selector::ResidueInMembraneSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datacache  )

overridevirtual

Initialize any data members of this instance from an input tag and a DataMap object.

Noop implementation in the base class in the case that a derived class has no need to read data from an input tag

Reimplemented from core::select::residue_selector::ResidueSelector.

References set_select_in_membrane().

void core::select::residue_selector::ResidueInMembraneSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and core::select::residue_selector::xsd_type_definition_w_attributes().

Referenced by core::select::residue_selector::ResidueInMembraneSelectorCreator::provide_xml_schema().

void core::select::residue_selector::ResidueInMembraneSelector::set_select_in_membrane

(

bool const &

select_in_membrane

)

References select_in_membrane_.

Referenced by parse_my_tag().

Member Data Documentation

bool core::select::residue_selector::ResidueInMembraneSelector::select_in_membrane_

private

Referenced by apply(), and set_select_in_membrane().

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The documentation for this class was generated from the following files:

• src/core/select/residue_selector/ResidueInMembraneSelector.hh
• src/core/select/residue_selector/ResidueInMembraneSelector.cc