CreateGlycanSequonMover.hh File Reference

Mutates residues to create a potential glycosylation site using known sequence motifs of N- or C- linked glycans. Includes options for Enhanced Sequons for N-linked glycans that have been shown to have higher rates of glycosylation as well as other positions that have been shown to influence the glycosylation chemistry. More...

#include <protocols/carbohydrates/CreateGlycanSequonMover.fwd.hh>
#include <protocols/calc_taskop_movers/CreateSequenceMotifMover.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/select/residue_selector/ResidueSelector.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <basic/datacache/DataMap.fwd.hh>

Classes
class	protocols::carbohydrates::CreateGlycanSequonMover
	Mutates residues to create a potential glycosylation site using known sequence motifs of N- or C- linked glycans. Includes options for Enhanced Sequons for N-linked glycans that have been shown to have higher rates of glycosylation as well as other positions that have been shown to influence the glycosylation chemistry. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::carbohydrates

Enumerations
enum	protocols::carbohydrates::GlycanSequon {   protocols::carbohydrates::n_linked_typical = 1, protocols::carbohydrates::n_linked_basic_enhanced, protocols::carbohydrates::n_linked_best_enhanced, protocols::carbohydrates::c_linked_NxC,   protocols::carbohydrates::c_linked_WxxW, protocols::carbohydrates::c_linked_WSTxC }

Functions
std::map< GlycanSequon, std::string >	protocols::carbohydrates::create_sequons ()
	Create a map of the name and full sequon. More...
std::ostream &	protocols::carbohydrates::operator<< (std::ostream &os, CreateGlycanSequonMover const &mover)
	private methods /// More...

Detailed Description

Mutates residues to create a potential glycosylation site using known sequence motifs of N- or C- linked glycans. Includes options for Enhanced Sequons for N-linked glycans that have been shown to have higher rates of glycosylation as well as other positions that have been shown to influence the glycosylation chemistry.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)