| AtomRefMapping class | core::chemical::AtomRefMapping< FromRef, ToRef > | friend |
| AtomRefMapping() | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| AtomRefMapping(FromRef const &invalid_from, ToRef const &invalid_to) | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| AtomRefMapping(bool identity) | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| AtomRefMapping(MutableResidueType const &restype) | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| AtomRefMapping(ResidueType const &restype) | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| begin() const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| clear() | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| const_iterator typedef | core::chemical::AtomRefMapping< FromRef, ToRef > | |
| count(FromRef const &key) const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| downstream_combine(AtomRefMapping< ToRef, OToRef > const &vmap_to_add) const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| empty() const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| end() const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| erase(FromRef const &in) | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| identity(bool setting) | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| identity() const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| identity_ | core::chemical::AtomRefMapping< FromRef, ToRef > | private |
| invalid_entry() const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| invalid_from_ | core::chemical::AtomRefMapping< FromRef, ToRef > | private |
| invalid_key() const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| invalid_to_ | core::chemical::AtomRefMapping< FromRef, ToRef > | private |
| invalidate(FromRef const &in) | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| mapping_ | core::chemical::AtomRefMapping< FromRef, ToRef > | private |
| operator==(AtomRefMapping< FromRef, ToRef > const &other) const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| operator[](FromRef const &in) const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| operator[](FromRef const &in) | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| reverse() const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| reverse_lookup(ToRef const &out) const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| show(std::ostream &output) const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| SubMap typedef | core::chemical::AtomRefMapping< FromRef, ToRef > | private |
| upstream_combine(AtomRefMapping< OFromRef, FromRef > const &vmap_to_add) const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |
| vectorize(ResidueType const &from_res, ResidueType const &to_res) const | core::chemical::AtomRefMapping< FromRef, ToRef > | inline |