Rosetta: protocols::rotamer_recovery::RRComparerChiDiff Class Reference

#include <RRComparer.hh>

Inheritance diagram for protocols::rotamer_recovery::RRComparerChiDiff:

Inheritance graph

Public Member Functions
	RRComparerChiDiff ()

	~RRComparerChiDiff () override

	RRComparerChiDiff (RRComparerChiDiff const &)

void	set_recovery_threshold (core::Real const setting) override

void	set_absolute_threshold (core::Real const setting) override

virtual void	set_max_chi_considered (core::Size const max_chi)

std::string	get_name () const override

std::string	get_parameters () const override

bool	measure_rotamer_recovery (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::Real &score, bool &recovered) override

void	parse_attributes_from_tag (utility::tag::TagCOP tag) override

Public Member Functions inherited from protocols::rotamer_recovery::RRComparer
	~RRComparer () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

Static Public Member Functions
static void	append_attributes (utility::tag::AttributeList &attlist)

Private Attributes
core::Real	tolerance_

core::Real	absolute_threshold_

bool	limit_chi_angles_

core::Size	max_chi_considered_

Constructor & Destructor Documentation

protocols::rotamer_recovery::RRComparerChiDiff::RRComparerChiDiff ( )

protocols::rotamer_recovery::RRComparerChiDiff::~RRComparerChiDiff ( )

overridedefault

protocols::rotamer_recovery::RRComparerChiDiff::RRComparerChiDiff ( RRComparerChiDiff const & src )

Member Function Documentation

void protocols::rotamer_recovery::RRComparerChiDiff::append_attributes ( utility::tag::AttributeList & attlist )

static

Referenced by protocols::rotamer_recovery::RRComparerChiDiffCreator::append_attributes().

string protocols::rotamer_recovery::RRComparerChiDiff::get_name ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

string protocols::rotamer_recovery::RRComparerChiDiff::get_parameters ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

bool protocols::rotamer_recovery::RRComparerChiDiff::measure_rotamer_recovery	(	core::pose::Pose const &	pose1,
		core::pose::Pose const &	pose2,
		core::conformation::Residue const &	res1,
		core::conformation::Residue const &	res2,
		core::Real &	score,
		bool &	recovered
	)

overridevirtual

measure the rotamer recovery by comparing rotamer bins

Returns: true, if the measurement was successful, false otherwise

Implements protocols::rotamer_recovery::RRComparer.

References core::conformation::Residue::aa(), core::conformation::Residue::chi(), core::chemical::ResidueType::chi_2_proton_chi(), limit_chi_angles_, max_chi_considered_, protocols::mean_field::min(), core::chemical::ResidueTypeBase::name(), core::conformation::Residue::name(), core::conformation::Residue::nchi(), core::chemical::num_canonical_aas, core::pack::dunbrack::subtract_chi_angles(), tolerance_, protocols::rotamer_recovery::TR(), and core::conformation::Residue::type().

void protocols::rotamer_recovery::RRComparerChiDiff::parse_attributes_from_tag ( utility::tag::TagCOP tag )

overridevirtual

Reimplemented from protocols::rotamer_recovery::RRComparer.

References limit_chi_angles_, and max_chi_considered_.

void protocols::rotamer_recovery::RRComparerChiDiff::set_absolute_threshold ( core::Real const setting )

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

References absolute_threshold_.

void protocols::rotamer_recovery::RRComparerChiDiff::set_max_chi_considered ( core::Size const max_chi )

virtual

References limit_chi_angles_, and max_chi_considered_.

void protocols::rotamer_recovery::RRComparerChiDiff::set_recovery_threshold ( core::Real const setting )

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

References tolerance_.

Member Data Documentation

core::Real protocols::rotamer_recovery::RRComparerChiDiff::absolute_threshold_

private

Referenced by set_absolute_threshold().

bool protocols::rotamer_recovery::RRComparerChiDiff::limit_chi_angles_

private

Referenced by measure_rotamer_recovery(), parse_attributes_from_tag(), and set_max_chi_considered().

core::Size protocols::rotamer_recovery::RRComparerChiDiff::max_chi_considered_

private

Referenced by measure_rotamer_recovery(), parse_attributes_from_tag(), and set_max_chi_considered().

core::Real protocols::rotamer_recovery::RRComparerChiDiff::tolerance_

private

Referenced by measure_rotamer_recovery(), and set_recovery_threshold().

The documentation for this class was generated from the following files:

src/protocols/rotamer_recovery/RRComparer.hh
src/protocols/rotamer_recovery/RRComparer.cc