RNA_DeNovoProtocol.cc File Reference

#include <protocols/rna/denovo/RNA_DeNovoProtocol.hh>
#include <protocols/rna/denovo/RNA_DeNovoProtocolCreator.hh>
#include <core/import_pose/options/RNA_DeNovoProtocolOptions.hh>
#include <protocols/rna/denovo/RNA_FragmentMonteCarlo.hh>
#include <core/fragment/rna/FullAtomRNA_Fragments.hh>
#include <protocols/rna/movers/RNA_LoopCloser.hh>
#include <protocols/rna/denovo/movers/RNA_Minimizer.hh>
#include <core/import_pose/RNA_BasePairHandler.hh>
#include <core/import_pose/RNA_DeNovoParameters.hh>
#include <protocols/rna/denovo/RNA_DeNovoPoseInitializer.hh>
#include <protocols/rna/denovo/movers/RNA_Relaxer.hh>
#include <core/import_pose/libraries/RNA_ChunkLibrary.hh>
#include <protocols/rna/setup/RNA_MonteCarloJobDistributor.hh>
#include <protocols/rna/setup/RNA_CSA_JobDistributor.hh>
#include <protocols/network/cloud.hh>
#include <core/io/silent/ScoreFileSilentStruct.hh>
#include <core/pose/rna/RNA_BasePairClassifier.hh>
#include <protocols/rna/denovo/util.hh>
#include <protocols/stepwise/modeler/rna/checker/RNA_VDW_BinChecker.hh>
#include <protocols/scoring/VDW_CachedRepScreenInfo.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/chemical/rna/util.hh>
#include <core/scoring/rna/chemical_shift/RNA_ChemicalShiftPotential.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/AtomID.hh>
#include <core/id/DOF_ID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/io/silent/RNA_SilentStruct.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/io/silent/util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/pose/rna/RNA_BaseDoubletClasses.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyMap.hh>
#include <utility/file/file_sys_util.hh>
#include <numeric/MathNTensor.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <basic/options/keys/cloud.OptionKeys.gen.hh>
#include <iostream>
#include <protocols/viewer/GraphicsState.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::rna
	protocols::rna::denovo

Functions
static basic::Tracer	protocols::rna::denovo::TR ("protocols.rna.denovo.RNA_DeNovoProtocol")
std::ostream &	protocols::rna::denovo::operator<< (std::ostream &os, RNA_DeNovoProtocol const &mover)