#include <BasePairStepLibrary.hh>

Inheritance diagram for core::import_pose::libraries::BasePairStepLibrary:

Public Member Functions
	BasePairStepLibrary (bool const canonical=true)

	~BasePairStepLibrary () override

bool	has_value (BasePairStepSequence const &base_pair_step_sequence) const

utility::vector1 < core::pose::MiniPoseOP > const &	mini_pose_list (BasePairStepSequence const &base_pair_step_sequence) const

core::pose::PoseCOP const &	scratch_pose (BasePairStepSequence const &base_pair_step_sequence) const

bool	canonical () const

std::string	database_dir () const

Private Member Functions
void	initialize ()

void	initialize_data (BasePairStepSequence const &base_pair_step_sequence, bool const load_in_poses=true) const

Private Attributes
bool const	canonical_

std::map< BasePairStepSequence, utility::vector1 < core::pose::MiniPoseOP > >	mini_pose_lists_

std::map< BasePairStepSequence, core::pose::PoseCOP >	scratch_poses_

Constructor & Destructor Documentation

core::import_pose::libraries::BasePairStepLibrary::BasePairStepLibrary ( bool const canonical = true )

References initialize().

core::import_pose::libraries::BasePairStepLibrary::~BasePairStepLibrary ( )

overridedefault

Member Function Documentation

bool core::import_pose::libraries::BasePairStepLibrary::canonical ( ) const

inline

References canonical_.

Referenced by core::import_pose::libraries::check_base_pair_step_availability().

std::string core::import_pose::libraries::BasePairStepLibrary::database_dir ( ) const

References canonical_.

Referenced by core::import_pose::libraries::check_base_pair_step_availability(), and initialize_data().

bool core::import_pose::libraries::BasePairStepLibrary::has_value ( BasePairStepSequence const & base_pair_step_sequence ) const

References mini_pose_lists_.

Referenced by core::import_pose::libraries::check_base_pair_step_availability(), initialize_data(), mini_pose_list(), and scratch_pose().

void core::import_pose::libraries::BasePairStepLibrary::initialize ( )

private

References canonical_, initialize_data(), core::import_pose::MAX_BULGE_LENGTH(), core::chemical::rings::q, and core::chemical::rna::rna_nts().

Referenced by BasePairStepLibrary().

void core::import_pose::libraries::BasePairStepLibrary::initialize_data	(	BasePairStepSequence const &	base_pair_step_sequence,
		bool const	load_in_poses = `true`
	)		const

private

References database_dir(), has_value(), mini_pose_list(), mini_pose_lists_, core::import_pose::libraries::BasePairStepSequence::num_bulge(), core::import_pose::process_input_file(), scratch_poses_, core::import_pose::libraries::BasePairStepSequence::subdir(), core::import_pose::libraries::BasePairStepSequence::tag(), core::pose::tag_from_pose(), and core::import_pose::TR().

Referenced by initialize(), mini_pose_list(), and scratch_pose().

utility::vector1< core::pose::MiniPoseOP > const & core::import_pose::libraries::BasePairStepLibrary::mini_pose_list ( BasePairStepSequence const & base_pair_step_sequence ) const

References has_value(), initialize_data(), and mini_pose_lists_.

Referenced by initialize_data(), and core::import_pose::libraries::RNA_ChunkLibrary::setup_base_pair_step_chunks().

pose::PoseCOP const & core::import_pose::libraries::BasePairStepLibrary::scratch_pose ( BasePairStepSequence const & base_pair_step_sequence ) const

References has_value(), initialize_data(), and scratch_poses_.

Referenced by core::import_pose::libraries::RNA_ChunkLibrary::setup_base_pair_step_chunks().