core::select::residue_selector::RandomGlycanFoliageSelector Class Reference

Selects a random carbohydrate residue from a subset or selector, then selects the rest of the glycan foliage. Used for sampling. More...

#include <RandomGlycanFoliageSelector.hh>

Inheritance diagram for core::select::residue_selector::RandomGlycanFoliageSelector:

Public Types
typedef core::select::residue_selector::ResidueSelectorOP	ResidueSelectorOP
typedef core::select::residue_selector::ResidueSubset	ResidueSubset

Public Member Functions
	RandomGlycanFoliageSelector ()
	Constructor. More...
	RandomGlycanFoliageSelector (ResidueSubset const &subset)
	Constructor passing a subset from which to choose from. More...
	RandomGlycanFoliageSelector (ResidueSelectorOP selector)
	Constructor passing a selector, from which to generate a subset on apply and from which to choose the roots from. More...
	RandomGlycanFoliageSelector (RandomGlycanFoliageSelector const &src)
	Copy Constructor. Usually not necessary unless you need deep copying (e.g. OPs) More...
void	set_subset (ResidueSubset const &subset)
	Set a subset to select the glycan root and subsequent foliage on. More...
void	set_selector (ResidueSelectorCOP selector)
	Set a selector to set the glycan root and subsequent foliage on. More...
	~RandomGlycanFoliageSelector () override
	Destructor. More...
ResidueSelectorOP	clone () const override
	Clone operator. More...
ResidueSubset	apply (core::pose::Pose const &pose) const override
	"Apply" function. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override
	XML parse. More...
std::string	get_name () const override
	Get the mover class name. More...
Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...
	~ResidueSelector () override
	Destructor. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
	Get the mover class name. More...
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
	Provide XSD information, enabling mechanical validation of input XML. More...

Private Member Functions
void	setup ()
	Setup anyting nessessary for this class. More...

Private Attributes
ResidueSelectorCOP	selector_
ResidueSubset	subset_

Detailed Description

Selects a random carbohydrate residue from a subset or selector, then selects the rest of the glycan foliage. Used for sampling.

Member Typedef Documentation

typedef core::select::residue_selector::ResidueSelectorOP core::select::residue_selector::RandomGlycanFoliageSelector::ResidueSelectorOP

typedef core::select::residue_selector::ResidueSubset core::select::residue_selector::RandomGlycanFoliageSelector::ResidueSubset

Constructor & Destructor Documentation

core::select::residue_selector::RandomGlycanFoliageSelector::RandomGlycanFoliageSelector

(

)

Constructor.

core::select::residue_selector::RandomGlycanFoliageSelector::RandomGlycanFoliageSelector

(

ResidueSubset const &

subset

)

Constructor passing a subset from which to choose from.

References subset_.

core::select::residue_selector::RandomGlycanFoliageSelector::RandomGlycanFoliageSelector

(

ResidueSelectorOP

selector

)

Constructor passing a selector, from which to generate a subset on apply and from which to choose the roots from.

References selector_.

core::select::residue_selector::RandomGlycanFoliageSelector::RandomGlycanFoliageSelector

(

RandomGlycanFoliageSelector const &

src

)

Copy Constructor. Usually not necessary unless you need deep copying (e.g. OPs)

References selector_.

core::select::residue_selector::RandomGlycanFoliageSelector::~RandomGlycanFoliageSelector ( )

overridedefault

Destructor.

Member Function Documentation

RandomGlycanFoliageSelector::ResidueSubset core::select::residue_selector::RandomGlycanFoliageSelector::apply ( core::pose::Pose const &  pose ) const

overridevirtual

"Apply" function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected ("true") or not ("false").

Implements core::select::residue_selector::ResidueSelector.

References core::select::residue_selector::GlycanResidueSelector::apply(), core::conformation::Residue::is_carbohydrate(), core::pose::Pose::residue(), core::scoring::rg, selector_, core::select::residue_selector::GlycanResidueSelector::set_include_root(), core::select::residue_selector::GlycanResidueSelector::set_select_from_branch_residue(), subset_, core::pose::Pose::total_residue(), and core::select::residue_selector::TR().

std::string core::select::residue_selector::RandomGlycanFoliageSelector::class_name ( )

static

Get the mover class name.

Referenced by get_name(), core::select::residue_selector::RandomGlycanFoliageSelectorCreator::keyname(), and provide_xml_schema().

RandomGlycanFoliageSelector::ResidueSelectorOP core::select::residue_selector::RandomGlycanFoliageSelector::clone ( ) const

overridevirtual

Clone operator.

Clone function.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

Copy this object and return owning pointer to the copy (created on the heap).

Implements core::select::residue_selector::ResidueSelector.

std::string core::select::residue_selector::RandomGlycanFoliageSelector::get_name ( ) const

overridevirtual

Get the mover class name.

Implements core::select::residue_selector::ResidueSelector.

References class_name().

void core::select::residue_selector::RandomGlycanFoliageSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data  )

overridevirtual

XML parse.

Parse RosettaScripts tags and set up this mover.

Reimplemented from core::select::residue_selector::ResidueSelector.

References core::select::residue_selector::parse_residue_selector(), and selector_.

void core::select::residue_selector::RandomGlycanFoliageSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

Provide XSD information, enabling mechanical validation of input XML.

References core::select::residue_selector::attributes_for_parse_residue_selector(), class_name(), and core::select::residue_selector::xsd_type_definition_w_attributes_and_optional_subselector().

Referenced by core::select::residue_selector::RandomGlycanFoliageSelectorCreator::provide_xml_schema().

void core::select::residue_selector::RandomGlycanFoliageSelector::set_selector

(

ResidueSelectorCOP

selector

)

Set a selector to set the glycan root and subsequent foliage on.

References selector_.

void core::select::residue_selector::RandomGlycanFoliageSelector::set_subset

(

ResidueSubset const &

subset

)

Set a subset to select the glycan root and subsequent foliage on.

References selector_, and subset_.

void core::select::residue_selector::RandomGlycanFoliageSelector::setup ( )

private

Setup anyting nessessary for this class.

Member Data Documentation

ResidueSelectorCOP core::select::residue_selector::RandomGlycanFoliageSelector::selector_

private

Referenced by apply(), parse_my_tag(), RandomGlycanFoliageSelector(), set_selector(), and set_subset().

ResidueSubset core::select::residue_selector::RandomGlycanFoliageSelector::subset_

private

Referenced by apply(), RandomGlycanFoliageSelector(), and set_subset().

---

The documentation for this class was generated from the following files:

• src/core/select/residue_selector/RandomGlycanFoliageSelector.hh
• src/core/select/residue_selector/RandomGlycanFoliageSelector.cc