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Rosetta
2021.16
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This is the complete list of members for protocols::flexpack::rotamer_set::FlexbbRotamerSet, including all inherited members.
| add_rotamer(conformation::Residue const &rotamer) override | core::pack::rotamer_set::RotamerSet_ | virtual |
| add_rotamer_into_existing_group(conformation::Residue const &rotamer) override | core::pack::rotamer_set::RotamerSet_ | virtual |
| BasicDataCache typedef | core::conformation::RotamerSetBase | |
| BasicDataCacheOP typedef | core::conformation::RotamerSetBase | |
| begin() const override | core::pack::rotamer_set::RotamerSet_ | inlinevirtual |
| build_dependent_rotamers(core::pack::rotamer_set::RotamerSets const &rotamer_sets, core::pose::Pose const &pose, core::scoring::ScoreFunction const &scorefxn, core::pack::task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph) override | protocols::flexpack::rotamer_set::FlexbbRotamerSet | virtual |
| build_dependent_rotamers_for_concrete(RotamerSets const &rotamer_sets, pose::Pose const &pose, scoring::ScoreFunction const &, task::PackerTask const &task, conformation::Residue const &existing_residue, chemical::ResidueTypeCOP concrete_residue, utility::graph::GraphCOP packer_neighbor_graph) | core::pack::rotamer_set::RotamerSet_ | protected |
| build_optimize_H_rotamers(pose::Pose const &pose, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, utility::graph::GraphCOP packer_neighbor_graph, scoring::ScoreFunction const &scorefxn) | core::pack::rotamer_set::RotamerSet_ | protected |
| build_rotamers(pose::Pose const &the_pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, bool use_neighbor_context=true) override | core::pack::rotamer_set::RotamerSet_ | virtual |
| build_rotamers_for_concrete(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, utility::graph::GraphCOP packer_neighbor_graph, bool use_neighbor_context=true) | core::pack::rotamer_set::RotamerSet_ | protected |
| build_rotamers_for_concrete_virt(core::pose::Pose const &pose, core::scoring::ScoreFunction const &scorefxn, core::pack::task::PackerTask const &task, core::chemical::ResidueTypeCOP concrete_residue, utility::graph::GraphCOP packer_neighbor_graph, bool use_neighbor_context=true) override | protocols::flexpack::rotamer_set::FlexbbRotamerSet | protectedvirtual |
| bump_check(core::conformation::ResidueCOP rotamer, core::scoring::ScoreFunction const &sf, core::pose::Pose const &pose, core::pack::task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSet | protectedvirtual |
| ChiSetOP typedef | core::pack::rotamer_set::RotamerSet_ | |
| compute_one_and_two_body_energies(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< core::PackerEnergy > &one_body_energies, utility::vector1< utility::vector1< core::PackerEnergy > > &two_body_energies, utility::vector1< core::Size > &packable_neighbors) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| compute_one_body_energies(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< core::PackerEnergy > &energies, bool const no_update=false) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| compute_one_body_energy_maps(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< scoring::EnergyMap > &energies) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| data() | core::conformation::RotamerSetBase | |
| data() const | core::conformation::RotamerSetBase | |
| drop_rotamer(Size rot_id) override | core::pack::rotamer_set::RotamerSet_ | virtual |
| drop_rotamers(utility::vector1< bool > const &rotamers_to_delete) override | core::pack::rotamer_set::RotamerSet_ | virtual |
| drop_rotamers_by_index(utility::vector1< Size > const &rotamer_indices_to_delete) override | core::pack::rotamer_set::RotamerSet_ | virtual |
| end() const override | core::pack::rotamer_set::RotamerSet_ | inlinevirtual |
| existing_residue_ | protocols::flexpack::rotamer_set::FlexbbRotamerSet | private |
| filter_water_rotamers(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< conformation::ResidueOP > const &new_rotamers, utility::vector1< conformation::ResidueOP > &filtered_rotamers) | core::pack::rotamer_set::RotamerSet_ | protected |
| FlexbbRotamerSet() | protocols::flexpack::rotamer_set::FlexbbRotamerSet | |
| get_n_residue_groups() const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| get_n_residue_types() const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| get_n_rotamers_for_residue_group(Size which_resgroup) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| get_n_rotamers_for_residue_type(Size which_resgroup) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| get_residue_group_begin(Size which_resgroup) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| get_residue_group_index_for_rotamer(Size which_rotamer) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| get_residue_type_begin(Size which_restype) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| get_residue_type_index_for_rotamer(Size which_rotamer) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| get_trie(Size method_enum_id) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| id_for_current_rotamer() const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| initialize_pose_for_rotset_creation(pose::Pose &) const override | core::pack::rotamer_set::RotamerSet_ | inlinevirtual |
| nonconst_rotamer(Size rot_id) override | core::pack::rotamer_set::RotamerSet_ | virtual |
| num_rotamers() const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| owner_ | protocols::flexpack::rotamer_set::FlexbbRotamerSet | private |
| parent typedef | protocols::flexpack::rotamer_set::FlexbbRotamerSet | |
| resid() const override | core::pack::rotamer_set::RotamerSet | inlinevirtual |
| ResidueCOP typedef | core::pack::rotamer_set::RotamerSet_ | |
| ResidueOP typedef | core::pack::rotamer_set::RotamerSet_ | |
| rotamer(Size rot_id) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| rotamer_data_cache(Size rot_id) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| rotamer_ref(Size rot_id) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| RotamerSet() | core::pack::rotamer_set::RotamerSet | |
| RotamerSet_() | core::pack::rotamer_set::RotamerSet_ | |
| RotamerSetBase() | core::conformation::RotamerSetBase | |
| RotamerTrieBaseOP typedef | core::pack::rotamer_set::RotamerSet_ | |
| set_existing_residue(core::conformation::ResidueCOP residue) | protocols::flexpack::rotamer_set::FlexbbRotamerSet | |
| set_extra_samples(task::PackerTask const &task, int num_10A_neighbors, int chi, chemical::ResidueTypeCOP concrete_residue, utility::vector1< Real > &extra_chi_steps) const | core::pack::rotamer_set::RotamerSet_ | |
| set_owner(FlexbbRotamerSetsCAP owner) | protocols::flexpack::rotamer_set::FlexbbRotamerSet | |
| set_resid(Size resid) | core::pack::rotamer_set::RotamerSet | |
| show(std::ostream &out) const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| store_trie(Size method_enum_id, conformation::AbstractRotamerTrieOP trie) override | core::pack::rotamer_set::RotamerSet_ | virtual |
| update_rotamer_offsets() const override | core::pack::rotamer_set::RotamerSet_ | virtual |
| ~FlexbbRotamerSet() override | protocols::flexpack::rotamer_set::FlexbbRotamerSet | |
| ~RotamerSet() override | core::pack::rotamer_set::RotamerSet | |
| ~RotamerSet_() override | core::pack::rotamer_set::RotamerSet_ | |
| ~RotamerSetBase() override | core::conformation::RotamerSetBase |
1.8.7