AlignmentAAFinderFilter.cc File Reference

#include <protocols/evolution/AlignmentAAFinderFilter.hh>
#include <protocols/evolution/AlignmentAAFinderFilterCreator.hh>
#include <utility/tag/Tag.hh>
#include <map>
#include <algorithm>
#include <numeric>
#include <iterator>
#include <fstream>
#include <iostream>
#include <boost/algorithm/string.hpp>
#include <string>
#include <basic/Tracer.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/sequence/util.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <protocols/evolution/AlignmentCleanerTools.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Atom.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/task_operations/ThreadSequenceOperation.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/EnergyMap.hh>
#include <utility/graph/Graph.hh>
#include <utility/vector1.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/filters/filter_schemas.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::evolution

Typedefs
using	protocols::evolution::bools = utility::vector1< bool >

Functions
static basic::Tracer	protocols::evolution::TR ("protocols.evolution.AlignmentAAFinder")

Detailed Description

Author

Christoffer Norn