protocols::simple_filters::ResidueDepthFilter Member List

This is the complete list of members for protocols::simple_filters::ResidueDepthFilter, including all inherited members.

apply(core::pose::Pose const &) const override	protocols::simple_filters::ResidueDepthFilter	virtual
class_name()	protocols::simple_filters::ResidueDepthFilter	static
clear()	protocols::filters::Filter	inlinevirtual
clone() const override	protocols::simple_filters::ResidueDepthFilter	inlinevirtual
compare_by_superposition(utility::vector1< ResidueDepthDataCOP > const &context_rdd, utility::vector1< core::Vector > const &frag_crd, utility::vector1< ResidueDepthDataCOP > const &context_rdd_ref, utility::vector1< core::Vector > const &frag_crd_ref) const	protocols::simple_filters::ResidueDepthFilter	private
db_	protocols::simple_filters::ResidueDepthFilter	private
dbfile_	protocols::simple_filters::ResidueDepthFilter	private
evalres_	protocols::simple_filters::ResidueDepthFilter	private
fill_GUIP()	protocols::simple_filters::ResidueDepthFilter	private
fill_neighs(ResidueDepthData &rdd, utility::vector1< ResidueDepthData > const &pdb_rdds) const	protocols::simple_filters::ResidueDepthFilter	private
Filter()	protocols::filters::Filter
Filter(std::string const &)	protocols::filters::Filter
Filter(Filter const &)	protocols::filters::Filter
frag_db_	protocols::simple_filters::ResidueDepthFilter	private
fresh_instance() const override	protocols::simple_filters::ResidueDepthFilter	inlinevirtual
gamma_	protocols::simple_filters::ResidueDepthFilter	private
get_n8(core::pose::Pose const &pose) const	protocols::simple_filters::ResidueDepthFilter	private
get_residue_depth(core::pose::Pose const &pose) const	protocols::simple_filters::ResidueDepthFilter
get_residue_similarity(core::conformation::Residue const &rsd, utility::vector1< core::Vector > const &frag_crd, core::Size const n8, utility::vector1< ResidueDepthDataCOP > const context_rdd, utility::vector1< core::Size > const &close_ids, core::Size const n) const	protocols::simple_filters::ResidueDepthFilter	private
get_scdepth_avrg() const	protocols::simple_filters::ResidueDepthFilter	inline
get_scdepth_fvar() const	protocols::simple_filters::ResidueDepthFilter	inline
get_scdepth_sdev() const	protocols::simple_filters::ResidueDepthFilter	inline
get_SDE_score(core::pose::Pose const &pose)	protocols::simple_filters::ResidueDepthFilter
get_simscore(core::chemical::AA const aa1, core::chemical::AA const aa2) const	protocols::simple_filters::ResidueDepthFilter	private
get_type() const	protocols::filters::Filter	inlinevirtual
get_user_defined_name() const	protocols::filters::Filter	inline
GUIP_matrix_	protocols::simple_filters::ResidueDepthFilter	private
GUIP_matrix_file_	protocols::simple_filters::ResidueDepthFilter	private
initialize()	protocols::simple_filters::ResidueDepthFilter	private
make_context(core::pose::Pose const &pose, core::Size const ires) const	protocols::simple_filters::ResidueDepthFilter	private
make_context_ref(core::Size const ipdb, core::Size const ires) const	protocols::simple_filters::ResidueDepthFilter	private
maxdist_	protocols::simple_filters::ResidueDepthFilter	private
mindist_	protocols::simple_filters::ResidueDepthFilter	private
name() const override	protocols::simple_filters::ResidueDepthFilter	virtual
ncandidate1_	protocols::simple_filters::ResidueDepthFilter	private
ncandidate2_	protocols::simple_filters::ResidueDepthFilter	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override	protocols::simple_filters::ResidueDepthFilter	virtual
pdbid_	protocols::simple_filters::ResidueDepthFilter	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::filters::Filter	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::simple_filters::ResidueDepthFilter	static
RDC_	protocols::simple_filters::ResidueDepthFilter	private
read_db(std::string const infile)	protocols::simple_filters::ResidueDepthFilter	private
read_GUIP_matrix(std::string const infile)	protocols::simple_filters::ResidueDepthFilter	private
report(std::ostream &, core::pose::Pose const &) const	protocols::filters::Filter	inlinevirtual
report_sm(core::pose::Pose const &) const	protocols::filters::Filter	inlinevirtual
ResidueDepthFilter()	protocols::simple_filters::ResidueDepthFilter
score(core::pose::Pose &pose)	protocols::filters::Filter	virtual
scorename_	protocols::filters::Filter	protected
search_close_frags(utility::vector1< core::Vector > const &frag_crd, core::Size const n8, core::Size const npick) const	protocols::simple_filters::ResidueDepthFilter	private
set_niter(core::Size const value)	protocols::simple_filters::ResidueDepthFilter	inline
set_report_crd(bool const value)	protocols::simple_filters::ResidueDepthFilter	inline
set_user_defined_name(std::string const &name)	protocols::filters::Filter	inline
similarity_mode_	protocols::simple_filters::ResidueDepthFilter	private
~Filter() override	protocols::filters::Filter
~ResidueDepthFilter() override	protocols::simple_filters::ResidueDepthFilter