protocols::loop_modeler::LoopModeler Member List

This is the complete list of members for protocols::loop_modeler::LoopModeler, including all inherited members.

::LoopModelerTests class	protocols::loop_modeler::LoopModeler	friend
add_child(ChildSubclassOP child)	protocols::loop_modeling::LoopMover	inlineprotected
apply(Pose &pose) override	protocols::loop_modeling::LoopMover	virtual
build_stage()	protocols::loop_modeler::LoopModeler
build_stage_	protocols::loop_modeler::LoopModeler	private
centroid_stage()	protocols::loop_modeler::LoopModeler
centroid_stage_	protocols::loop_modeler::LoopModeler	private
clear_children()	protocols::loop_modeling::LoopMover	protected
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::loop_modeler::LoopModeler	virtual
count_children() const	protocols::loop_modeling::LoopMover	protected
create()	protocols::moves::Mover	virtual
define_composition_schema(utility::tag::XMLSchemaDefinition &xsd, utility::tag::XMLSchemaComplexTypeGenerator &ct_gen, utility::tag::XMLSchemaSimpleSubelementList &subelements)	protocols::loop_modeling::LoopMover	static
disable_build_stage()	protocols::loop_modeler::LoopModeler
disable_centroid_stage()	protocols::loop_modeler::LoopModeler
disable_fullatom_stage()	protocols::loop_modeler::LoopModeler
do_apply(Pose &pose) override	protocols::loop_modeler::LoopModeler	protectedvirtual
protocols::loop_modeling::LoopMover::do_apply(Pose &pose, Loop const &loop)	protocols::loop_modeling::LoopMover	protectedvirtual
enable_build_stage()	protocols::loop_modeler::LoopModeler
enable_centroid_stage()	protocols::loop_modeler::LoopModeler
enable_fullatom_stage()	protocols::loop_modeler::LoopModeler
fresh_instance() const	protocols::moves::Mover	virtual
fullatom_stage()	protocols::loop_modeler::LoopModeler
fullatom_stage_	protocols::loop_modeler::LoopModeler	private
get_additional_output()	protocols::moves::Mover	virtual
get_children() const	protocols::loop_modeling::LoopMover	protected
get_children_names(utility::vector1< std::string > &names, std::string indent="") const	protocols::loop_modeling::LoopMover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_default_task_factory(core::pose::Pose &pose)	protocols::loop_modeler::LoopModeler
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_loop(core::Size index) const	protocols::loop_modeling::LoopMover
get_loops()	protocols::loop_modeling::LoopMover
get_loops() const	protocols::loop_modeling::LoopMover
get_name() const override	protocols::loop_modeler::LoopModeler	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_task_factory()	protocols::loop_modeler::LoopModeler
get_task_factory(core::pack::task::TaskFactoryOP fallback)	protocols::loop_modeler::LoopModeler
get_tool(std::string key) const	protocols::loop_modeling::LoopMover	inline
get_tool(std::string key, ToolTypeOP fallback) const	protocols::loop_modeling::LoopMover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
is_build_stage_enabled_	protocols::loop_modeler::LoopModeler	private
is_centroid_stage_enabled_	protocols::loop_modeler::LoopModeler	private
is_fullatom_stage_enabled_	protocols::loop_modeler::LoopModeler	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
LoopModeler()	protocols::loop_modeler::LoopModeler
LoopMover()	protocols::loop_modeling::LoopMover
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::loop_modeler::LoopModeler	static
name()	protocols::moves::Mover	inlinestatic
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::loop_modeler::LoopModeler	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
prepare_for_centroid_	protocols::loop_modeler::LoopModeler	private
prepare_for_fullatom_	protocols::loop_modeler::LoopModeler	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::loop_modeler::LoopModeler	static
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
remove_child(LoopMoverOP child)	protocols::loop_modeling::LoopMover	protected
request_fold_tree() const	protocols::loop_modeling::LoopMover	virtual
reset_status()	protocols::moves::Mover
set_cen_scorefxn(core::scoring::ScoreFunctionOP scorefxn)	protocols::loop_modeler::LoopModeler
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_fa_scorefxn(core::scoring::ScoreFunctionOP scorefxn)	protocols::loop_modeler::LoopModeler
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_loop(Loop const &loop)	protocols::loop_modeling::LoopMover
set_loops(LoopsOP loops)	protocols::loop_modeling::LoopMover
set_loops(Loops const &loops)	protocols::loop_modeling::LoopMover
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_task_factory(core::pack::task::TaskFactoryOP task_factory)	protocols::loop_modeler::LoopModeler
set_tool(std::string key, ToolTypeOP value)	protocols::loop_modeling::LoopMover	inline
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_empty_config()	protocols::loop_modeler::LoopModeler
setup_fold_tree(Pose &pose, LoopsCOP loops, FoldTreeRequest request)	protocols::loop_modeling::LoopMover	static
setup_kic_config()	protocols::loop_modeler::LoopModeler
setup_kic_with_fragments_config()	protocols::loop_modeler::LoopModeler
setup_loophash_kic_config(bool perturb_sequence, std::string seqposes_no_mutate_str)	protocols::loop_modeler::LoopModeler
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
trust_fold_tree()	protocols::loop_modeling::LoopMover
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
use_default_task_factory_	protocols::loop_modeler::LoopModeler	private
was_successful() const	protocols::loop_modeling::LoopMover
was_successful(bool value)	protocols::loop_modeling::LoopMover	inline
~LoopModeler() override	protocols::loop_modeler::LoopModeler