core::fragment::rna::RNA_Fragments Class Reference

#include <RNA_Fragments.hh>

Inheritance diagram for core::fragment::rna::RNA_Fragments:

Public Member Functions
	RNA_Fragments ()
	~RNA_Fragments () override
virtual void	apply_random_fragment (core::pose::Pose &pose, core::Size const position, core::Size const size, core::Size const type, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, core::Size const symm_hack_arity) const
virtual void	apply_best_fragment (core::scoring::ScoreFunctionOP sfxn, core::pose::Pose &pose, core::Size const position, core::Size const size, core::Size const type, RNA_FragmentHomologyExclusionCOP const &homology_exclusion, core::pose::toolbox::AtomLevelDomainMapCOP atom_level_domain_map, core::Size const symm_hack_arity, core::Size const exhaustive) const
virtual FragmentLibraryOP	get_fragment_library_pointer (std::string const &, std::string const &, RNA_FragmentHomologyExclusionCOP const &, utility::vector1< SYN_ANTI_RESTRICTION > const &, Size const ) const
virtual void	insert_fragment (core::pose::Pose &, Size const , TorsionSet const &, core::pose::toolbox::AtomLevelDomainMapCOP) const
virtual bool	is_fullatom ()

Constructor & Destructor Documentation

core::fragment::rna::RNA_Fragments::RNA_Fragments ( )

default

core::fragment::rna::RNA_Fragments::~RNA_Fragments ( )

overridedefault

Member Function Documentation

void core::fragment::rna::RNA_Fragments::apply_best_fragment ( core::scoring::ScoreFunctionOP  sfxn, core::pose::Pose &  pose, core::Size const  position, core::Size const  size, core::Size const  type, RNA_FragmentHomologyExclusionCOP const &  homology_exclusion, core::pose::toolbox::AtomLevelDomainMapCOP  atom_level_domain_map, core::Size const  symm_hack_arity, core::Size const  exhaustive  ) const

virtual

Reimplemented in core::fragment::rna::FullAtomRNA_Fragments.

Referenced by protocols::rna::denovo::movers::RNA_FragmentMover::random_fragment_insertion().

void core::fragment::rna::RNA_Fragments::apply_random_fragment ( core::pose::Pose &  pose, core::Size const  position, core::Size const  size, core::Size const  type, RNA_FragmentHomologyExclusionCOP const &  homology_exclusion, core::pose::toolbox::AtomLevelDomainMapCOP  atom_level_domain_map, core::Size const  symm_hack_arity  ) const

virtual

Reimplemented in protocols::rna::denovo::coarse::CoarseRNA_Fragments, and core::fragment::rna::FullAtomRNA_Fragments.

Referenced by protocols::rna::denovo::movers::RNA_FragmentMover::random_fragment_insertion().

virtual FragmentLibraryOP core::fragment::rna::RNA_Fragments::get_fragment_library_pointer ( std::string const &  , std::string const &  , RNA_FragmentHomologyExclusionCOP const &  , utility::vector1< SYN_ANTI_RESTRICTION > const &  , Size  const  ) const

inlinevirtual

Reimplemented in core::fragment::rna::FullAtomRNA_Fragments.

Referenced by core::fragment::rna::analyze_for_homology().

virtual void core::fragment::rna::RNA_Fragments::insert_fragment ( core::pose::Pose &  , Size  const, TorsionSet const &  , core::pose::toolbox::AtomLevelDomainMapCOP    ) const

inlinevirtual

Reimplemented in core::fragment::rna::FullAtomRNA_Fragments, and protocols::rna::denovo::coarse::CoarseRNA_Fragments.

Referenced by core::fragment::rna::analyze_for_homology().

bool core::fragment::rna::RNA_Fragments::is_fullatom ( )

virtual

Reimplemented in core::fragment::rna::FullAtomRNA_Fragments, and protocols::rna::denovo::coarse::CoarseRNA_Fragments.

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The documentation for this class was generated from the following files:

• src/core/fragment/rna/RNA_Fragments.hh
• src/core/fragment/rna/RNA_Fragments.cc