protocols::denovo_design::filters::SSPredictionFilter Member List

This is the complete list of members for protocols::denovo_design::filters::SSPredictionFilter, including all inherited members.

apply(core::pose::Pose const &pose) const override	protocols::denovo_design::filters::SSPredictionFilter	virtual
blueprint_	protocols::denovo_design::filters::SSPredictionFilter	private
class_name()	protocols::denovo_design::filters::SSPredictionFilter	static
clear()	protocols::filters::Filter	inlinevirtual
clone() const override	protocols::denovo_design::filters::SSPredictionFilter	virtual
cmd_	protocols::denovo_design::filters::SSPredictionFilter	private
compute(core::pose::Pose const &pose) const	protocols::denovo_design::filters::SSPredictionFilter
compute_boltz_sum(utility::vector1< core::Real > const &probabilities) const	protocols::denovo_design::filters::SSPredictionFilter	private
compute_mismatch_prob(utility::vector1< core::Real > const &probabilities) const	protocols::denovo_design::filters::SSPredictionFilter	private
Filter()	protocols::filters::Filter
Filter(std::string const &)	protocols::filters::Filter
Filter(Filter const &)	protocols::filters::Filter
fresh_instance() const override	protocols::denovo_design::filters::SSPredictionFilter	virtual
get_type() const	protocols::filters::Filter	inlinevirtual
get_user_defined_name() const	protocols::filters::Filter	inline
mismatch_probability_	protocols::denovo_design::filters::SSPredictionFilter	private
name() const override	protocols::denovo_design::filters::SSPredictionFilter	virtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data_map) override	protocols::denovo_design::filters::SSPredictionFilter	virtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::filters::Filter	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::denovo_design::filters::SSPredictionFilter	static
psipred_interface_	protocols::denovo_design::filters::SSPredictionFilter	private
report(std::ostream &out, core::pose::Pose const &pose) const override	protocols::denovo_design::filters::SSPredictionFilter	virtual
report_sm(core::pose::Pose const &pose) const override	protocols::denovo_design::filters::SSPredictionFilter	virtual
score(core::pose::Pose &pose)	protocols::filters::Filter	virtual
scorename_	protocols::filters::Filter	protected
scratch_dir_	protocols::denovo_design::filters::SSPredictionFilter	private
secstruct_	protocols::denovo_design::filters::SSPredictionFilter	private
set_blueprint(protocols::parser::BluePrintOP blueprint)	protocols::denovo_design::filters::SSPredictionFilter
set_blueprint_file(std::string const &blueprint_file)	protocols::denovo_design::filters::SSPredictionFilter
set_cmd(std::string const &cmd)	protocols::denovo_design::filters::SSPredictionFilter
set_mismatch_probability(bool const mismatch_probability)	protocols::denovo_design::filters::SSPredictionFilter
set_psipred_interface(core::io::external::PsiPredInterfaceOP psipred)	protocols::denovo_design::filters::SSPredictionFilter	inline
set_scratch_dir()	protocols::denovo_design::filters::SSPredictionFilter	private
set_secstruct(std::string const secstruct)	protocols::denovo_design::filters::SSPredictionFilter
set_temperature(core::Real const temp)	protocols::denovo_design::filters::SSPredictionFilter
set_threshold(core::Real const threshold)	protocols::denovo_design::filters::SSPredictionFilter
set_use_confidence(bool const use_confidence)	protocols::denovo_design::filters::SSPredictionFilter
set_use_probability(bool const use_probability)	protocols::denovo_design::filters::SSPredictionFilter
set_use_svm(bool const use_svm)	protocols::denovo_design::filters::SSPredictionFilter
set_user_defined_name(std::string const &name)	protocols::filters::Filter	inline
ss_predictor_	protocols::denovo_design::filters::SSPredictionFilter	private
SSPredictionFilter()	protocols::denovo_design::filters::SSPredictionFilter
SSPredictionFilter(core::Real const threshold, std::string const &cmd, std::string const &blueprint_filename, bool const use_probability, bool const mismatch_probability, bool const use_scratch_dir=false)	protocols::denovo_design::filters::SSPredictionFilter
temp_	protocols::denovo_design::filters::SSPredictionFilter	private
threshold_	protocols::denovo_design::filters::SSPredictionFilter	private
use_confidence_	protocols::denovo_design::filters::SSPredictionFilter	private
use_probability_	protocols::denovo_design::filters::SSPredictionFilter	private
use_svm_	protocols::denovo_design::filters::SSPredictionFilter	private
~Filter() override	protocols::filters::Filter
~SSPredictionFilter() override	protocols::denovo_design::filters::SSPredictionFilter